Sphingomonas sp. LK11: AV944_10875
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Entry
AV944_10875 CDS
T04954
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03420
Nucleotide excision repair
splk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AV944_10875
03430 Mismatch repair
AV944_10875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_10875
Enzymes [BR:
splk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AV944_10875
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AV944_10875
MMR (mismatch excision repair)
Other MMR factors
AV944_10875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
APX66244
LinkDB
All DBs
Position
complement(2381003..2383294)
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AA seq
763 aa
AA seq
DB search
MTVPSTDPAASLADYPYLRTLNPAQREAVLTTDGPVLVLAGAGTGKTAALTARLAHLLYT
RKAWPSEILSVTFTNKAAREMRERVGRLVGDAVEGMPWLGTFHAIGAKMLRRHAELVGLQ
SNFTILDTDDQLRLLKQLIVAADIDEKRFPARALGGLIDEWKNKGLVPGDIDAGEAERYA
NGQGAELYRQYQDRLRSVNACDFGDLLLHMLTILKTHRDVLEQYQQRFRYIMVDEYQDTN
SVQYLWLRLLAQARKNIACVGDDDQSIYSWRGAQVENILRFERDFPGAKVIRLEQNYRST
PHILGAASGVIANNGGRLGKTLWTELDVGEKVQVLGVWDGPEEARRVGEEIESARRSGTS
YDNIAILVRASHQTREFEDRFIAIGLPYRIVGGFRFYERAEIRDALAYLRIVNQPSDDLA
FERIVNVPKRGLGDKALAKIHRLARAEGLPLTIASARILDTDELTPQARRSLGNLIGDIA
RWRDMARDLAHPELARQLLDESGYTAMYQNEKSAEAAGRLENLSELVRAMEDYESLGAFL
EHVSLVMDRDGDQREPEVTIMTIHAAKGLEFDTVFLAGWEEGLFPSQRAIDEGGTRSLEE
ERRLAYVAITRARRKAVILHAANRRIYGQWTSSLPSRFVGELPPEHIESETSMTGGESLW
RANWSEHADPFANVGRGTGRGPGWQRAATGQNATPARPARIVESRSPSVGLGQKGRDDLR
VGERVFHQKFGYGEIAAIEGNKLEIDFEQAGRKRVMDSFVTKG
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgccttctaccgatcccgccgcttcgctggccgattatccctatcttcggacg
ttgaaccccgcgcagcgcgaggcggtgttgaccacggacgggccggtgctggtgctggcg
ggcgcgggcacgggcaagacggcggcgctgaccgcacggctggcgcaccttctctatacg
cgcaaggcctggccgtcggagattctgtcggtcaccttcaccaacaaggccgcacgcgag
atgcgcgagcgcgtcgggcggctggtcggcgacgcggtggaggggatgccatggctgggc
actttccatgcgattggcgccaagatgctgcgccgccatgccgaactggtcgggctgcaa
tccaacttcacgatcctcgacaccgacgatcagctgcgattgctcaagcagttgatcgtg
gcggcggacatcgacgaaaagcggtttccggcgcgcgctttgggcggcctgatcgacgaa
tggaagaacaaggggctggtccccggcgatatcgatgcgggcgaagccgagcgctacgcc
aacggccagggagccgagctctatcgccaatatcaggaccggctgcgcagcgtgaatgcc
tgcgacttcggcgatctgctgctccacatgctgaccatcctgaagactcatcgcgacgtg
ctggagcagtatcagcagcgtttccgctatatcatggtggacgagtatcaggacaccaac
agcgtccagtatctctggctgcgactgcttgcccaggcgcgcaagaacatcgcctgcgtc
ggcgatgacgatcagtccatctattcctggcgtggcgcgcaggtggagaatatcctgcgc
ttcgagcgggactttccgggtgccaaggtcatccggctggaacagaattaccgttcgacg
ccgcacatcctgggcgccgcctcgggggtgattgccaataatggcggtcggctcggcaag
acgctttggaccgagttggacgtcggcgagaaggttcaggtgctgggcgtctgggacggt
cccgaggaagcacggcgggtcggcgaggagatcgagtcggcgcggcggtcgggtacctcc
tacgacaatatcgccattctcgttcgcgcctcgcaccagacccgcgagttcgaggatcgc
tttatcgcgatcggtctgccctatcggatcgtcggcgggttccgcttttacgagcgcgcc
gaaatccgcgatgcgctggcgtatctgcgcatcgtcaaccagccgtcggacgatctggcg
ttcgagcggatcgtcaacgttcccaagcgcgggttgggcgacaaggcgctggccaagatc
caccggctggcgcgggccgaaggactgccgctgaccatcgcctcggcgcgcatccttgac
accgacgaactgaccccgcaggcgcggcggagcctgggcaatctgatcggcgacatcgcc
cgctggcgcgacatggcccgcgacctcgcgcatccggagctggcgcgccagttgctcgac
gagagcggatataccgccatgtaccagaacgaaaagtcggcggaggcggccggacggctg
gagaatctgtccgaactcgtccgcgcaatggaggattacgagtcgctcggcgcgttcttg
gagcatgtctcgctggtcatggaccgcgacggcgaccagcgcgagcccgaggtgacgatc
atgacgatccatgccgccaaggggctggagttcgacacggtgttcctggcgggctgggag
gaaggcctgtttccgtcgcagcgtgcgatcgatgaaggcggcacgcgcagcctggaggag
gagcggcggctcgcttatgtcgcgatcacccgcgcgcggcgcaaggcggtgatcctgcat
gcggccaaccgccgtatctatggccaatggacgtcaagcctgcccagccgcttcgttggc
gaattgccgcccgagcatatcgagagcgagacgagcatgaccggcggcgaaagcctttgg
cgggccaactggtccgaacatgccgaccccttcgccaatgtcgggcgcggcaccgggcgc
ggtccgggctggcagcgggcagcgacggggcagaatgcgacccctgcccgtcccgctcgg
atcgtcgagtcgcgttcgccctccgtcggattggggcagaaggggcgtgacgacctgcgt
gtcggcgagcgcgtgttccaccagaagttcggctatggcgagatcgcggcgatcgagggc
aacaagctggagatcgatttcgagcaggccgggcgcaagcgggtaatggacagcttcgtc
accaaggggtga
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