Sphingomonas sp. LK11: AV944_12000
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Entry
AV944_12000 CDS
T04954
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AV944_12000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_12000
Enzymes [BR:
splk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AV944_12000
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AV944_12000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_30
Cas3-like_C_2
SecA_DEAD
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APX66432
LinkDB
All DBs
Position
2607593..2610778
Genome browser
AA seq
1061 aa
AA seq
DB search
MRMLSKAEIATMPPTGDGPVPLPGIAELAAGAAEILDRSDIILAVTDETRALGVTRMLEA
MSPDATILFCPGSDALPGDDAPASPANVGQRVSALHRAQMTLAAKDRGRIALVTSGESLA
RALPPPETFAAEPPCVAIDDACDLADLHAMLLDLGYIADERVDEPGEVALRGHVLDVFPA
DAEQPLRVEVADGRIIAIRSYDPADQRSTGEIERRELGRVAEPPLGQTQTSLLDHLPGAC
VIIEPAADERRRRLLLLSADVAKRGSKRAARDMIDERHWKKALDQRQTAEIARIAEPPPR
FVESRSPLRDFAATARAAIKEGTRVVLIGSERDLRFLGKRVDNVLRKTAERAESWQAISK
AKAGSLLTLVAPAERGFARDAILAVSAADLLGSRAEREDGAIPHVDLSLMQTAEIRVGDT
VIHEDHGIATVVGLETIDGQDGVSGDAIKLEYARDATRLVPVAEADRLWRYGGEDDAVRL
DTLDGKSWHERRRGIDEAIATTARQLTDMAAERAERHAPVLDPPVADYERFAAGFPYSET
PDQLTAIEAVRADLASGRPMDRLVVGDVGFGKTEVALRAAAIAALAGRQVVVAAPTTVLA
RQHLDSFATRFEEAGIAVAGLSRLSTAAEKRKVKAGLADGSIRIVIGTGAVAAKGVTYKD
LALVIVDEEQRFGAADKARLQALSSGHVLTLSATPIPRTLQAALVGLRQLSMIATPPARR
QPIRTAVSTFSPETLRAALLRERSRGGQSFVVVPRIADMAPLAEKLAQIVPELEVMQAHG
KLPAAEIDDVMVRFGRGEGDVLLATNIIEAGLDVPRANTMAIVHADRFGLAQLHQLRGRV
GRGHRRGQVLLFAKGEEAIAPRTLKRLRTLEAFDRLGAGFAISARDLDMRGAGDLLGDTQ
AGHMRLIGVELYQQLLEDALRTARGETVERWTPELRIGMEGRLPEAWIPDEDLRISLYAR
LGRLRDDARLDAFEAEMEDRFGELPDDAATLLSLARLRERMRARSIARIDAGPAAIALTP
HGQQPDLNGIEGLEEKDGRHLLKERHDSPADRLARLGELLA
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcatgttgtctaaagccgagatcgccaccatgcctcccaccggggacggccccgta
ccgctgcccggcatcgccgaactggcggcgggggcggcggaaatcctcgaccgatccgac
atcatcctggccgtcaccgatgagacgcgcgcgctgggcgtgacgcggatgctggaggcg
atgtcccccgacgcgaccatcctgttctgccccggttccgacgccctgccgggcgacgac
gcacccgcctcgcccgccaatgtggggcagcgcgtgtcagcgctgcatcgtgcacagatg
acgctggcggcgaaggaccggggccgcatcgccctcgtcacttccggcgagtcgctggcc
cgcgcgctgccgccgccggagaccttcgccgccgagccgccctgtgtcgcgatcgacgac
gcgtgcgatctggcggatctccacgcgatgctgctcgacctgggctatatcgccgacgaa
cgggtcgacgagcccggcgaagtcgcgctgcgcggccatgtgctggacgtgtttcccgcc
gacgccgaacagcccttgcgcgtcgaggtcgcggacggccggatcatcgcgatccgatcc
tacgaccccgccgatcagcggagcaccggcgagatcgaacgccgggaactgggccgcgtg
gccgaaccgccgctcgggcagacgcagaccagcctgctcgatcacctccccggcgcctgt
gtcattatcgagcccgccgccgatgagcgtcgccgccgcctattgctgctgagcgccgat
gtcgccaagcgcggatcgaagcgcgcggcccgcgacatgatcgatgagcgtcactggaag
aaggcgcttgatcaacgccaaaccgccgagatcgcccgcatcgccgagcccccgccgcgc
ttcgtcgagagccgttcgcccctgcgcgacttcgccgccaccgcccgcgctgcgataaag
gagggcacgcgcgtcgtcctgatcggcagcgaacgcgacctgcgcttcctgggcaagcgg
gtcgacaatgtcctgcgcaagaccgcagagcgggccgaaagctggcaggccatatcgaag
gccaaggccggatcgctcctgacgcttgtggcacccgccgagcgcggctttgcgcgcgac
gctatcctcgcggtcagcgccgccgatctgctgggcagccgtgccgagcgggaggacggg
gccatcccgcatgtcgacctgtcgctgatgcagactgccgaaatccgggtcggcgacacc
gtcatccacgaggatcacggcatcgccaccgtcgtcgggctggagacgatcgacgggcag
gacggggtgtcgggcgacgcgatcaagctggaatatgcacgcgatgcgacccgactggtc
cccgtcgccgaagccgaccggctgtggcgctatggcggcgaggacgacgcggttcgcctg
gacacgctggacggcaagagctggcacgaacgacggcgcggcatcgacgaggcgatcgcg
acgaccgcgcgtcagctgaccgatatggctgcagagcgcgccgagcgtcatgcgcccgta
ctcgatcctcccgtcgcggattatgagcggttcgcggcgggatttccgtatagcgagacc
ccggaccagttgaccgccatcgaggcggtgcgcgccgatctcgcctccggccgcccgatg
gaccggctggtcgtcggcgatgtcggcttcggcaagaccgaggtcgccctgcgcgccgcc
gccatcgccgcactcgccgggcggcaggtggtggtggctgcgccgaccaccgtgctggcc
cggcagcatctcgacagcttcgcgacgcggttcgaggaagcgggcatcgcggtcgccggc
ctatcacgcctgtccaccgccgccgaaaagcgcaaggtcaaggcggggctggccgatggc
agcatccgcatcgtcataggcaccggcgcggtcgcggccaaaggcgtgacctacaaggac
ctggcactggtcatcgtcgacgaggagcagcgtttcggtgccgccgacaaggcccggctc
caggcgctgtcttcgggtcatgtactgaccctgtccgccacgccgatcccgcgcacgctc
caggccgcgctggtgggcttgcgtcagctgtcgatgatcgccaccccgcccgcccggcgg
cagcccatccgcaccgccgtctcgaccttctcccccgagacgctgcgggcggcgctgctg
cgcgagcggtcgcgcggcgggcagagctttgtcgtggtgccgcgtatcgccgacatggcg
ccgctcgccgaaaagctcgcccagatcgtacccgagctggaggtcatgcaggcgcatggc
aagctgcccgctgcggagatcgacgacgtcatggtccgcttcggccggggtgagggcgat
gtcctgctggcgaccaacatcatcgaggcggggctggacgtgccgcgcgccaacaccatg
gccatcgtccatgccgaccgtttcggcctggcgcagctgcaccagctgcgcggacgcgtc
gggcgcgggcatcgccgcgggcaggtcctgctgttcgccaagggcgaggaagccatcgcg
ccgcgcaccctgaaacggctgcgcacgctggaggcattcgacaggctgggcgcggggttc
gcgatcagcgcgcgcgacctcgatatgcgcggcgcgggcgatctgctgggcgatacccag
gccggtcacatgcggctgatcggagtcgaactgtaccagcaattgctggaggatgcgctg
cgcaccgcgcgcggcgagacggtcgaacgctggacgccggagcttcgcatcgggatggag
ggtcgcctgcccgaggcctggattcccgatgaggatttgcgcatttcactttatgcccgg
ttggggcggctgcgcgacgatgccaggctcgatgcgttcgaggcggaaatggaggatcgg
ttcggcgaactgccggacgatgccgccacgctgttgtcgctggcccggttgcgcgagcgg
atgcgggcgcggtcgatcgcgcggatcgatgcgggacccgccgccatcgcactgaccccg
cacggccagcaacccgacctgaacggtatcgaggggctggaggagaaggacggtcgtcat
ctcctgaaggaacggcacgacagtcccgccgatcggctggcgcggctgggcgagttgctg
gcttga
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