Sphingomonas sp. LK11: AV944_12165
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Entry
AV944_12165 CDS
T04954
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03030
DNA replication
splk03430
Mismatch repair
splk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AV944_12165
03430 Mismatch repair
AV944_12165
03440 Homologous recombination
AV944_12165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
splk03032
]
AV944_12165
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_12165
Enzymes [BR:
splk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AV944_12165
DNA replication proteins [BR:
splk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AV944_12165
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AV944_12165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
COE1_HLH
Scaffold
Motif
Other DBs
NCBI-ProteinID:
APX66459
LinkDB
All DBs
Position
complement(2644830..2648321)
Genome browser
AA seq
1163 aa
AA seq
DB search
MMHSGYVPLRIFSSFTMLDGAIDPKAIAAQAKANAFPAAGLTDRNGLYAAMAFSDAAKKA
GVQPVIGTMLGIARPDMPDNVGAVVDWIALYAQDVTGYDNLCALVSAAHLDRPIELAAHV
GFDTLQTFSKGLIALTAGGEGGIARLFAEGQPDRAKAYADRLQTIFGDRLYVELARRDDP
IEMAAEQDLIDLAYDRDLPLVATNPCCFTDSGFRDAHDAMLCIANSTYVEMDDRPKSCPE
AWLKPAEMMKQLFADLPEAIENTLVVAQRCAVMAPWRKPILPSLAGDREGEAAMLRRDAT
AGLNARLDRIAELEGEGEPGWREAYHERLTFEVDIIIQMGFPGYFLIVADFIKWAKDHDI
PVGPGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIR
YVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWDLKRA
LNGVPELAKEYANDNQVRRLLDLATKLEGLPRHSSTHAAGVVIGDRPLAQLVPLYRDPRS
DMPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQLLAKRGVEVDLGALAWDDEATYGL
LQKGDTVGVFQLESEGMRRTLSAVRPTNFGDIIALVSLYRPGPMDNIPSFGRRKQGTEEI
IYPHPLLEQILSETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKVKAEMDAQRAI
FVKGCQEVNGIPAQKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPHEFYAA
SMCYDMALTDKLAIFVDDARRLGVTMLPPCINASQAEFDVEPHEDGLAVRYALGALKSVG
EGAMEKLVVERQAGGAFASLDALAKRVDPRLMNKRQLETLASAGAFDGIEPNRAGVHAVA
ETVLAIAARTHEGRTSGQGGLFGETEVAGDAIKLPTGTRWTLSQRMEQEKEAFGFYFSAH
PVDRHAHIAKMHGARTYTSLTELIIPDDGARIGATMAALVEDARWRTSARGKRYMMAQLS
DATGQFLATCFDDSVAADLEKAAKEGHCALITVELDRRPGEEAPRVSIKRVQLFDGLAST
AKFVVEVTVTDKVAFKALHAMLDPLRNGRGEVRARIEGQDGDTLLTLGRNFLLDAELASH
IEDLPGVKAVAMKSSEARLALVS
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgatgcattccggatatgtgccgcttcgcatcttttcctccttcacgatgctcgacggc
gcgatcgatcccaaggcgattgcggcgcaggccaaggcgaatgcctttcccgccgccggg
ttgaccgatcgcaacggcctttatgccgcgatggccttttcggacgccgcgaagaaggcg
ggcgtgcagccggtcatcggcacgatgctaggcatcgcgcgtcccgacatgcccgacaat
gtcggcgcggtggtcgactggatcgcgctctatgcgcaggacgtgaccggttatgacaat
ctgtgcgcgctggtgtcggcggcgcatctggaccgcccgatcgaactcgccgcgcatgtc
ggcttcgacacgttgcagacgttcagcaagggcctgatagcgttgaccgccggtggcgag
ggcggtatcgcccgcctgttcgccgaggggcagccggatcgggcgaaagcctatgccgac
cggctccaaacgatcttcggcgaccggctctatgtcgaactcgcccgccgcgacgatccc
atcgagatggccgccgaacaggacctgatcgacttggcctatgaccgcgaccttcccctg
gtcgcgaccaacccttgctgtttcaccgatagcggtttccgcgatgcgcatgacgccatg
ctgtgcattgccaattcgacctatgtcgaaatggacgaccgccccaaaagctgtcccgag
gcgtggctcaagcccgccgagatgatgaagcagctattcgccgatctgcccgaagcgatc
gagaacacattggtcgtcgcccagcgttgcgcggtaatggcgccgtggcgcaagcccatc
ctccccagtcttgcgggcgaccgcgagggcgaggcggcgatgctccgccgcgacgcgacc
gccggcctgaacgcccggctcgaccgcatcgccgagctggaaggggagggcgaacccggc
tggcgcgaggcgtaccacgaacgcctgacgttcgaggtcgacatcatcattcagatgggt
ttccccggatacttcctgatcgtcgccgacttcatcaaatgggccaaggaccacgacatt
cccgtcggtccgggtcgtggttcgggcgcaggctcggtcgtcgcctgggcgctgaccatc
accgatctcgatcccctgaagctgggcctgctgttcgagcgcttcctcaacccggaacgc
gtgtcgatgcccgacttcgacatcgacttttgcgaaacccggcgtggcgaggtcatccgc
tacgtccaggagaaatacggccgcgatcaggtcgcgcagatcatcaccttcggtaagctg
aaggcgcgcgccgtgctcaaggacaccggtcgcgtgctccagatgagctatggccaggtc
gaccgcctcgccaagctggtgcccaaccacccgaccgacccctgggacctgaagcgcgcg
ctgaacggcgtgcccgagttggcgaaggagtacgccaacgacaatcaggttcgccgcctg
ctggatctcgccaccaagctggagggcctgccgcgccactcgtccacccacgccgccggt
gtggtgatcggcgaccggccgctggcgcagctggtgccgctctaccgcgatccgcgctcg
gacatgccggtcacgcagttcgacatgaagttcgtcgagggcgcggggctggtgaagttc
gacttcctcggcctgaagacgctgtccgttctgcaaaaggcggtgcagctgctcgccaag
cgtggggtcgaggtcgatctcggcgcgctcgcctgggatgacgaggcgacctatggcctg
ctccagaagggcgacacggtcggcgtgttccagctggaatcggaagggatgcggcgcacc
ctgtccgccgtacgcccgaccaatttcggcgacatcatcgcgctcgtgtcgctctatcgg
ccgggcccgatggacaatatccccagcttcggtcgccgcaagcaggggaccgaggagatc
atctacccgcaccccctgctcgaacagattttgtccgagacctacggcatcttcgtctat
caggaacaggtgatgcaggccgcccagatcctggcgggttattcgctgggcggcgccgat
cttctccgccgcgcgatgggcaagaaggtgaaggcggagatggacgcgcagcgcgccatc
ttcgtgaaggggtgccaggaggtgaacggcattcccgcgcaaaaggccaatgagctgttc
gacttgatcgacaagttcgcgggctatggcttcaacaagagccacgcggccgcctatgcg
ctgctcgcctatcagaccgcatggctgaaggcgcatcacccgcatgaattctatgccgcg
tcgatgtgctacgacatggcgctgaccgacaagctggccatcttcgtcgacgacgcgcgg
cgtctgggcgtgacgatgctgccgccctgcatcaacgccagccaggccgaattcgatgtc
gagccgcatgaggatggcctggccgtccgctacgcgctgggcgcgctgaagtcggtgggc
gaaggcgcgatggagaagctggtcgtcgagcgacaggcgggcggtgcctttgcctcgctc
gatgcgctggccaagcgggtcgacccgcgattgatgaacaagcgccagctggagaccctg
gcctctgcgggcgccttcgacgggatcgagcccaaccgggcgggcgttcacgcggtggcc
gaaacggtgctcgccatcgccgcgcgcactcatgaggggcggacgagcgggcagggcggc
ctgttcggcgagaccgaggtggcgggcgacgcgatcaagctgccgaccggcacccgctgg
accctgtcgcagcggatggagcaggagaaggaggcgttcggcttctatttctcggcgcat
cccgtcgatcgccatgcgcatatcgccaagatgcacggcgcgcggacctatacctcgctg
accgagctgatcatccctgatgacggggcgcggatcggcgcgaccatggcggcgctggtc
gaggatgcgcgctggcgtacctcggcacgcggcaagcgctacatgatggcgcagctatcg
gatgcgaccgggcagttcctggcgacctgtttcgacgattcggtggcggccgatctggaa
aaggcggccaaggaggggcattgcgcgctcatcaccgtcgagctggatcgccgaccgggc
gaggaagcgccgcgcgtcagcatcaagcgcgtccagctgttcgacggcctcgcgagcacc
gccaagttcgtggtggaagtgacggtgaccgacaaggtggcgttcaaggcgttgcatgcg
atgctggacccgctgcgcaacggccggggcgaagtacgcgcgcggatcgaggggcaggac
ggcgacacgctgttgacgctcggccgtaacttcctgctcgacgccgaactggccagccat
attgaggatttgccgggggtgaaggcggtggcgatgaagtcgtccgaagcgcggttggcc
ttggtgagttaa
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