Sphingomonas sp. LK11: AV944_12590
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Entry
AV944_12590 CDS
T04954
Name
(GenBank) DNA helicase UvrD
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
splk
Sphingomonas sp. LK11
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_12590
Enzymes [BR:
splk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AV944_12590
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
AV944_12590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
APX66526
LinkDB
All DBs
Position
complement(2730392..2733850)
Genome browser
AA seq
1152 aa
AA seq
DB search
MSARPMANLPPLKGDQAAASDPAAHVWLSASAGTGKTQVLAARVFRLLLRGVAPEAILCL
TFTKAGAAEMAQRINGRLAAWVRMPETELFRDLKALGETPTPDLRDRARTLFARVLDAPG
GGLRIQTIHGFCQGLLAAFPVEAGLAPGFRPLEAREEAVLAREALARMLETAEREGRVGP
VETVGALSLRLGEGGAEAFLAACARAPGALEAMPTGIQPWLRRALDLPSGDIDEAIAEGV
EEIDEDAVVRLAGANRAWGTATGDKAATTLERWIGSDRAGRVALLEELMGTVFTAKGEPR
KASKKLTDADPDYEDMARELGETCRHLLGLAARARHADLLADALSVGRDYARAYTLSKRA
IGAVDFDDLIRTTVELLERPGIGEWVRYKLDQVTEHVLIDEAQDTNAHQWRIVRALADEF
FVGRGLYAPSTRTLFTVGDHKQAIFGFQGTDPINFQAAELHFSRRADEVAGDDEWPPEER
GLPFNQLSLTHSFRSTTPILEFVDAAIEALGEPGMGMAGEVERHASEVKGPGRVTLWPPV
VAGGSDEDEEGWIDDAVRKVATDIARAVRRWLDDGVMLESKGRRLEPQDIMILVKRRGDL
ASLIVARLYAEGVPVAGVDRLRLNAPLAVQDLLATVRFALQPEDDLSLASLLVSPLIGWS
QDRLMAAGHRARGSLWAHLTRTLPADDLAPLRQMLARADVSTPYQFLEELLSGPLDGRRK
LIRRLGTEARDPIEELLNAALTFESTTTPSLQRFLDWFDRGDVEIVRDPSAPLDAVRVMT
AHGSKGLQAPLVILADATADPTASPRSILRWTPEPGALPIPVFPPRAEERGGPLDAVAAE
IAARELAEHWRLFYVAATRAEEQLVVAGALGKRAAGVPPMHSWYATCARAMTALGVPEVE
PGDGQSRQFLGSQPQPPVVARPGTVVVATAREETRLPDWVHAPAPQESRPPRPLAPSQLG
EDMVADPPPTPAMRAAAERGRLIHCLLERLPPVVPEQRRGAAERWLSQAAGVEDPAMRAD
VTGAVLAILDDPAYAPLFGPGSLAEAPIAATLANGLVVSGRVDRLLINADEIRLIDYKTG
RRAPGGIDDVPAFHLAQMAGYAAALEVIFPGRRVSVALLYTAGPRLVTVPDALLAAHKPG
YRDREQSLTLDG
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcccgtcccatggccaatcttcccccgctcaagggcgaccaggccgccgcgagc
gaccccgccgcgcatgtctggctgtccgcttcggcgggcaccggcaagacgcaggtgctc
gctgcgcgcgtgttccgcctgctgctgcgcggcgtcgcgcccgaggcgatattgtgcctg
accttcaccaaggccggggccgccgaaatggcgcagcggatcaacggacgcctcgccgcc
tgggtgcggatgcccgagaccgagctgttccgcgacctgaaggcgctgggcgaaacgccg
acgccggacctgcgcgaccgggcgcggaccctgttcgcccgtgtgctcgacgcgccgggc
ggcgggctgcgcatccagaccatccatggtttttgccaggggctgctcgcagccttcccg
gtcgaggccgggcttgcgccgggcttccgcccgctggaggcgcgcgaggaagcggtgcta
gcgcgtgaagccctggcgcgcatgctcgaaaccgccgagcgcgagggccgtgtcggcccg
gtcgagacggtcggcgcactctcgctgcggctgggcgagggcggggcggaggctttcctt
gccgcctgcgcccgcgcgccgggtgcgctggaggcgatgcccaccggcatccagccctgg
ctccgccgtgcgctcgatctgccgtcgggggatatcgacgaggcgattgccgagggtgtc
gaggaaatcgacgaggacgcggtcgtccgtctggcgggggcgaaccgggcctggggcacc
gcgaccggcgacaaggcggcgacgacgctggagcgctggatcggcagcgaccgggcgggg
cgggtggcgctgctcgaagaattgatgggcacggtcttcaccgccaagggcgaaccgcgc
aaggcgtccaagaagctgaccgacgccgatcccgattatgaggacatggcgcgcgaactg
ggtgagacctgccgccatttgctgggtctggcggcgcgggcgcgtcatgccgatctgctc
gccgatgcgctgagtgtggggcgtgactatgcgcgcgcctataccttgtcgaagcgcgcc
atcggggcggtcgatttcgacgacctgatccgcaccaccgtcgagctgctggagcggccc
ggcatcggtgaatgggtccgctacaagctcgaccaagtgaccgagcatgtcctgatcgac
gaggcgcaggacaccaacgcgcatcaatggcggatcgtgcgtgcgctggctgacgagttt
ttcgtcgggcgcggcctttatgcgccgtccacgcgaacgctgttcaccgtgggcgatcac
aaacaggcgatcttcggtttccagggcaccgacccgatcaacttccaggcggcggagctg
catttctcgcgccgcgcggacgaggtggcgggcgatgacgaatggccgcccgaggaacgc
ggcctgccgttcaaccagttgtcactgactcacagtttccgttcgaccacgccgatcctg
gagttcgtcgacgccgccatcgaggcgctgggcgagccgggcatgggcatggcgggcgaa
gtggagcgccatgcgagcgaggtgaagggccccggccgcgtcacgctctggccgccggtc
gtggcgggcggtagcgacgaggacgaggaaggctggatcgacgatgcggtgcgcaaggtc
gcaaccgacatcgcgcgcgccgtccgacgctggctggacgacggcgtcatgctggagagc
aagggccgtcggctggaaccgcaggacatcatgatcctggtcaagcggcgcggcgacctc
gcctcgttgatcgtcgcacggctctatgccgagggagtgccggtggcgggtgtcgaccgg
ctgcggctgaacgcgccgctggcggtgcaggatctgctggcgacggtgcggttcgcactt
cagcccgaggacgacctgtcgctggcgtcgctgctggtatcgccgctgatcggctggtcg
caggatcggttgatggcggccgggcaccgggcgcggggatcgctctgggcgcatctgacg
cgaaccttgcccgccgacgatctggccccgctccgccagatgctggcgcgtgccgatgtg
tcgacgccctaccagtttctggaggaattgctgtccggaccgctcgacgggcggcgcaag
ctgatccggcggctggggaccgaggcgcgcgatccgatcgaggaactgctcaacgccgcg
ctgacctttgagagcacgacgacgccctcgctccagcggttcctcgactggttcgatcgc
ggcgatgtcgagatcgtgcgcgatccgtccgcgccgctcgatgccgtgcgggtgatgacc
gcgcatggttccaaggggttgcaggcgccgctcgtcatcctggccgacgcaaccgccgat
ccgaccgcaagcccccgctcgatcctgcgctggacgccagagccgggggcattgccgatc
ccggtcttcccgccgcgcgccgaggaacggggcgggccgctggatgccgtcgccgccgag
atcgccgcgcgtgaactggccgagcattggcggctcttctacgtcgcggcgacgcgggcg
gaggagcaattggtggtcgcgggggcgctgggcaagcgagcggcgggcgtgccgccgatg
cacagctggtacgcgacctgcgcccgcgcgatgactgcgctgggtgtgcccgaggtcgag
ccgggtgacggccagtcgcgccagttccttggcagtcagccacagccgccggtcgtggcc
cgccccggcaccgtggtcgtggcgacggcgcgggaggagacgcggctgcccgactgggtt
catgcgcccgcgccgcaggagtcgcggccgccgcgcccgctcgcaccgtcgcagctgggc
gaggacatggtcgccgatccgccccccacgcccgccatgcgcgccgccgccgagcggggg
cggttgatccactgtctgctcgaacgtctgccgccggtggtgccggagcagcggcgcggg
gcggccgagcgctggctgtcccaggcggcaggggtcgaggatccggccatgcgcgcggac
gtgacgggggcggtcctcgcgatcctcgatgatccagcctatgcgccgctgttcgggccg
ggttcgctagccgaagcgccgatcgcggcgacgctggccaatggtctcgtcgtgtcgggt
cgggtcgaccgtctcctgatcaatgccgacgagatacgcctaatcgactataagaccggg
cggcgcgcgcccggcgggatcgacgatgtgcccgcattccatctggcgcagatggcgggt
tatgccgccgcgctggaggtgatctttccggggcggcgcgtgtcggtggcgctgctctac
acggcgggtccgcgcctggtcaccgtgccggatgcgctgctggccgcgcacaagcccggc
tatcgcgaccgggagcaaagcttgacgcttgatggttga
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