Sphingomonas sp. LK11: AV944_12595
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Entry
AV944_12595 CDS
T04954
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
splk
Sphingomonas sp. LK11
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_12595
Enzymes [BR:
splk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AV944_12595
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
AV944_12595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
APX66527
LinkDB
All DBs
Position
complement(2733989..2736943)
Genome browser
AA seq
984 aa
AA seq
DB search
MGEPRRPRLHTIPAHRGFADALVAGLMRRSGGDPLTLAQGMILLPTNRGVRAVTEAFVRA
SGGGLILPRMVALGDPELGEAAGSALDPADAEAPPPPAIAPSARRMILARLVEQERQRAG
QPVTAAEAVRLAGDLARTLDQMLVEEVDPAELAALDLGPELTEHWQSALATFSVVLDRWP
AVLERMGRIDAAKRRTLLLDRTAKRWAQAQPAGFVCAAGVTDTAPAVARLLRCVSEMPGG
SVVFAGLDLTMPDEEWDALGPHKPDPETGRTRRSIETHPQYALKLLLDRMGVGRGEVTVW
RGGGDYDAGAARGRAIANAMAPADFTGKWTDLPAEDRRLSGVSTIELATPAEEAQAIALA
LREAVEEPGRTAALVTPDRALARRVAAHCRRWNILIDDTAGRPLSILLPGTFLLQLAEAA
AQHFAPLPLLALLKHPLIRGEMERVEWLDGVRALDRALRGPRPAPGLDGIAAHVADKPTA
SAFWTKAAPMLEAVGRTFGDGPQGLRSLLACLRECGQTLCGDALWTGPAGRAAAEFLAGY
EEEADHGPARVDPAELPALLRSLFDEIAIRAIPREGQHPRLAIYGPIEARLQTADLMIAG
GLNEGVWPGRPAPDPWLAPRIRSLLGLVGLEQRIGIAAHDLAQAMGAPRAILTRARRDAS
GPTLASRFWLRLQAMAGERFEVHPSLARWAVELDRPDDYAPVDRPAPKPPAALRPTTISV
TEVDRLKADPYAFYARRVLRLSPLDPVDADPSAAWRGTAVHDILEMWWKKDACDVEALRP
RALAMLRDQRTHPMMRALWQPRLIEAIDWIAAEVAAKAGEGRHVLSAEGKGEAKLAGVTL
TGRFDRIDKAADGSLVVIDYKTGKPPSTTAVREGFSLQLGLLGLIAERGGFENVSGKAGG
FEYWSLGRGREGLGYIATPVDPDGKRERIRTDEFVSIAAANFAEAAGQWLTGDALFTAKL
VPEYAPYAEYDQLMRRDEWYGRDR
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgggtgagccacgccgcccgaggctgcacaccattccggcgcatcgtggatttgccgat
gcgctggtcgccgggctgatgcggcgcagcgggggcgatccgctgacactggcgcagggc
atgatcctgctgccgaccaatcgcggcgtccgcgcggtgaccgaggcgtttgtccgcgcg
agtggcggcggcctgatcctgccgcgcatggtcgcgctgggcgatcccgaactgggcgag
gcggcgggctccgcgctcgaccccgccgatgccgaagcacccccgccgcccgccatcgcg
ccctccgcgcgccggatgatcctggcgcggctggtcgagcaggaacggcagcgcgcgggc
cagccagtgacggcggccgaagccgttcggctggcgggcgatctggcccgcacgctggac
cagatgctggtcgaggaggtcgatccggccgaactcgccgcactcgacctgggccccgag
ctgaccgagcattggcagtcggcgttggcgactttctccgtggtgctcgaccgctggcct
gcggtgctggagcggatggggcggatcgatgcggcgaagcgccgcaccttgctgctcgac
cggacggccaagcgctgggcgcaggcgcagcccgccgggttcgtgtgtgcggcgggtgtc
accgataccgcgcctgcggtcgcgcggctgctgcgctgcgtgtcggagatgccgggcggc
tcggtggtgttcgccgggctggacctgaccatgcccgacgaggaatgggatgcgttgggg
ccccataagcccgatcccgagacgggccgcacccgccgctcgatcgagacgcacccgcaa
tatgcgctgaaactcctgctcgaccggatgggcgtcgggcgcggcgaggtgacggtgtgg
cgtggcggtggtgattatgacgcgggggccgcgcggggccgtgccatcgccaatgccatg
gccccggccgactttaccggcaaatggaccgacctgcccgctgaggaccggcggctgtcg
ggtgtctccaccatcgaactcgccacccccgccgaagaggcgcaggcgatcgcgctggca
ctgcgcgaagcggtcgaggagccgggccgtaccgccgcgctcgtcacccccgaccgcgcg
ctggcgcggcgcgtggcggcgcattgtcggcgctggaacatcctgatcgacgatacggca
gggcggcccttgtcgatcctgttgccgggcaccttcctgcttcaactggccgaagcggcg
gcgcagcatttcgcgccattgccgctgctcgctttgctcaagcacccgctgatccgtggc
gagatggagcgggtggagtggctcgacggcgtccgtgcgctcgaccgggcgctcaggggg
ccgcgtccggcgccggggctcgacggcatcgccgcgcatgtcgccgacaagcccacggct
tccgccttctggaccaaggccgcgccgatgctggaggccgtgggtcgaacctttggcgat
gggccgcagggattgcgcagcctgctcgcctgtctgcgcgaatgcgggcagaccctgtgc
ggcgatgcgctatggaccggccccgctggtcgcgcggcagcggagttcctggcgggttac
gaggaagaggccgatcacggccccgcccgggtcgatcccgccgagctgcccgcgctgctt
cgcagcctgttcgatgagatcgcgatccgcgccatcccgcgcgaaggccagcatccccgc
ctggccatctatgggccgatcgaggcacgtctccagaccgccgatctgatgatcgcgggc
ggcctgaacgagggcgtctggccggggcggcctgcgccggacccgtggctggcgccgcgt
atccgctcgctattgggcctggtcgggctggagcagcggatcggcatcgccgcgcatgat
ctggcacaggcgatgggggcaccccgcgcgatcctgacccgcgcgcgccgcgatgcgagc
ggaccgactttggcctcacgcttctggttgcggcttcaggccatggcgggcgagcggttc
gaggtgcatccctcactggcgcgctgggcggtcgaactagaccgaccggacgattacgcg
cccgtcgaccggcccgcgcccaagccgcccgctgcgctccggcccaccacgatctcggtg
accgaggtcgaccggctcaaggccgacccttacgccttttatgcgcgccgggtgctgcgc
ctgtcaccgctcgacccggtggatgccgacccgagcgcggcgtggcgcgggaccgccgtc
cacgacattctggagatgtggtggaagaaggacgcttgcgatgtcgaggcgctgcgcccc
cgcgcgctggcgatgctgcgcgaccagcggactcatccgatgatgcgcgcgctgtggcag
ccccggttgatcgaggcgatcgactggatcgccgccgaagtcgccgccaaggcgggcgag
ggccgccatgtcctgagcgccgagggcaagggcgaggccaagctggcgggcgtgacgctg
accggccggttcgaccggatcgacaaggcggcggacgggtcgctggtggtgatcgactat
aagaccggcaagccgccctcgacgacggcggtgcgcgaagggttcagcctgcaactcggc
ctgctcggcctgatcgccgagcggggcgggttcgagaatgtgtccggcaaggcgggcgga
ttcgaatattggtcgctggggcgcgggcgcgaggggctgggctatatcgccaccccggtc
gaccccgatggcaagcgcgagcggatacggaccgacgagttcgtgtccatcgcggcggcg
aacttcgccgaggcggcggggcagtggttgaccggcgatgcgctgtttaccgcgaaactg
gtgcccgaatatgcgccctatgcggaatatgaccagctgatgcggcgggatgaatggtat
ggccgtgatcggtaa
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