Sphingomonas sp. LK11: AV944_14150
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Entry
AV944_14150 CDS
T04954
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV944_14150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
splk03019
]
AV944_14150
03009 Ribosome biogenesis [BR:
splk03009
]
AV944_14150
Enzymes [BR:
splk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AV944_14150
Messenger RNA biogenesis [BR:
splk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AV944_14150
Ribosome biogenesis [BR:
splk03009
]
Prokaryotic type
rRNA helicases
AV944_14150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APX66773
LinkDB
All DBs
Position
complement(3085403..3087145)
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AA seq
580 aa
AA seq
DB search
MPFSALPPVLSAALSARGYTAPTPVQAAVIEDDAQGRDLIVSAQTGSGKTVAFGLAMASE
LLNGGDHLPQPGAPMALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDASRERRAL
SHGTHIVVGTPGRLRDHLERGALDLSSLKFVVLDEADEMLDMGFREDLEQILDGTPSERR
TLLFSATMPRPIVQLAKRYQTNAKRIETISEDKGHADIAYQAVTVAPADIEAAVVNLLRL
HEAEVAILFCATRDNVRHLHSSLVERGFSAVALSGEHSQNERNHALQALRDGRARVCVAT
DVAARGIDLPGLTLVIHVEIPRDAEALQHRSGRTGRAGRKGTAILIVPYPRRRRVEGMLR
GARIDAEWRRAPTLEEIRAQDRERLLAALLAPVEVDEGDRELATRLLAEKSPEDIAAALV
RAHRAALPQAEELVEGDAPAPRERREGFDDTAWFRMSVGRSQNADPRWLLPLICRRGHIT
RNEIGAIRIQPNETLFEIPSALASRFIAALKRTEADHAEDDIAIEQADGPPAGGSGHGGA
RRGGPGGNRPMGGRPAGGPGGPRRYSPRPTQGGPRGPRRG
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgcctttttctgccttgccgccggtattgtcggctgccctttccgcgcgtggctatacc
gcgccgacccccgttcaggccgccgtcatcgaggatgacgcccagggccgcgacctgatc
gtgtccgcccagaccggttcgggcaagaccgtcgccttcggcctcgccatggcgagcgag
ttgctgaacggcggcgatcacctgccccagccgggcgcgccgatggcgctggtcatcgcg
ccgacgcgcgagctggcgctgcaggtcagccgcgagctggaatggctttatgccggagcg
cgtgcgcgcattgcgacttgcgtcggcggcatggacgcctcgcgcgaacgtcgcgcgctc
agccatggcacccacatcgtcgtcggcacgccgggccgcctgcgtgaccatctggagcgc
ggcgcgctcgacctgtcgtcgctgaagttcgtcgtcctcgacgaggccgacgagatgctc
gacatgggcttccgcgaggacctggagcagattctcgacggcacgccgtccgagcgccgc
acgctcctcttctcggcgaccatgccgcgcccgatcgtgcagctcgccaagcgttaccag
accaatgccaagcggatcgagacgatcagcgaggacaagggccatgccgacatcgcctat
caggcggtgaccgtggcgcctgccgatatcgaggcggcggtggtcaacctgctgcgtctg
cacgaggccgaggtcgcgatcctgttctgcgccacgcgcgacaatgtccgccatctccat
tccagcctggtcgagcgcggcttctcggcggtcgcgctgtcgggcgagcattcgcagaac
gagcgcaaccatgcgctccaggcgctgcgtgacggccgcgcgcgcgtctgcgtcgcgacc
gacgtggcggcacgcggcatcgaccttccgggcctgacgctcgtcatccacgtcgaaatc
ccgcgcgatgccgaggcgttgcagcaccgttcgggccgcaccggccgcgccggtcgcaag
ggcaccgcgatcctgatcgttccctatccgcgccgtcgccgggtcgagggtatgctgcgc
ggggcgcgcatcgacgccgaatggcgccgtgcgccgacgctcgaggaaatccgtgcacag
gatcgcgagcgtctgctggcggcgcttctggcgccggtcgaggtggacgagggcgatcgt
gagctggccacccgcctgctcgccgaaaagtcgcccgaggacatcgccgccgcgctggtc
cgcgcacaccgtgccgcgctgccccaggccgaggaactggtcgagggtgatgctccggcg
ccgcgcgagcgtcgcgaagggttcgacgacaccgcctggttccgcatgagcgtcggtcgc
agccagaatgccgatccgcgctggctgctgccgctgatctgccgtcgcgggcacatcacc
cgcaacgagatcggtgcgatccgcatccagccgaacgagacgctgttcgaaatcccgtcg
gcgctggcgtcgcgcttcatcgccgcgctgaagcggaccgaggccgatcatgccgaggac
gatatcgcgatcgagcaggccgatggccctcccgccggtggctcgggccatggcggtgcg
cgtcgtggcggtccgggcggcaaccgtccgatgggcggccgccccgccggcggccccggc
ggcccgcgccgctactcgccgcgtcccacccagggcggcccgcgcggtccgcgtcgcggc
tga
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