Sphingomonas sp. LK11: AV944_16715
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Entry
AV944_16715 CDS
T04954
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AV944_16715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
splk03021
]
AV944_16715
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_16715
Enzymes [BR:
splk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AV944_16715
Transcription machinery [BR:
splk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AV944_16715
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AV944_16715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
APX67204
LinkDB
All DBs
Position
complement(3612754..3617040)
Genome browser
AA seq
1428 aa
AA seq
DB search
MNELTNFANPVAKPETFDQIQIGIASPDKIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVIEPGLTPLEKYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVRIMLENLDLEGEKVALLEELATTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLEKQKEPGEGMMLADMEEVHQALFA
GAVTLHTKIISRVPQTDENGEQYLKRFETTPGRMLLGETLPKSHKVPFDIVNRVLTKKDV
GEVIDEVYRHTGQKETVLFADAIMALGFRHAFRAGISFGKDDMIIAPDKDRLVDETREQV
KDFEQQYQDGLITQQEKYNKVIDAWSRCGDQVANSMMNEIKAVRHYEDGPMEGREKPINS
IYMMAHSGARGSPAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARK
GLADTALKTANSGYLTRRLVDVSQDCVIIEEDCGTTRALEMKAIVQGGSTIASLGERILG
RTTAEDIVNAKTGEVIIPSGVLLDEPMVARIEAANTQSVKIRSPLVCESKVGVCGKCYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAAVDGVVQFRD
LRLITDQRGRRVVLSRSGEIAIVDMDGRELSVDRIPYGAYVLFDDGHIVSKGDRMAEWDP
FTMPVITENPGTVKFQDLIEGKTLTEQVDEATGIAQRVVTEYRASTKSKEDLRPRMTLLD
DNSGEAGRYMLAPGATLSVEDGAQVQGGDVLARVARESAKTRDITGGLPRVAELFEARVP
KDSAIIAKVSGRVVFGKDYKAKRKIGIQPEDGGEVVEYLVPKSKVIDVQEGDYVKRGDNL
IGGSPDPHDILETMGVEPLAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLQKVEITDGG
DTTLLKGEQVDREEMDAINDKLDANQVRAQGKPVLLGITKASLQTRSFISAASFQETTRV
LTEAAVQGKQDTLMGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAALRAQQRKLAEAIV
APVSAAEQRAAENARSPREDVGTGNDPLAEVAPSGHGTDADAGEYLND
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaacttcgccaatccggtggccaagccggaaaccttcgaccagatt
cagatcggtatcgcgtcgcccgacaagatccgttcctggtcgttcggcgagatcaagaag
cccgagacgatcaactaccgcacgttcaagccggaacgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgaatgcttgtgcggcaagtacaagcgcatgaagtat
aagggcatcgtctgcgaaaagtgcggtgtcgaagtcacggtgtcgaaggtccgccgcgag
cggatgggccatatcgaactggccgcccccgtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctgtac
ttcgaagcctatatcgtcatcgagccgggcctgaccccgctggagaagtatcagcttctc
accgaggacgaactgctcgacgcgcaggatgaatatggcgaggacgccttctccgccggg
atcggtgccgaggcggtccgcatcatgctcgagaatctcgacctggaaggcgagaaggtc
gcgctgctcgaagagctggcgacgaccaagtcggagctgaagcccaagaagatcatcaag
cgcctgaaggtcgtcgagagcttcctggaatcgggcaaccgtcccgaatggatgatcctc
gaagtcattccggtcatcccgcccgagctgcgcccgctggtgccgctggacggcggtcgt
ttcgcgacctcggacctgaacgacctgtatcgccgcgtcatcaaccgcaacaaccgcctc
aagcgcctgatggagctgcgtgcgccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaagcggtcgacgcactgttcgacaatggccgtcgcggccgcacgatcacgggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgt
cagaaccttctgggtaagcgcgtcgactattcgggtcgttcggtcatcgtgaccggcccg
gagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgtctggacgccaagggtctgtcgatgaccctgaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctggacgaggtgatccgcgagcac
ccggtcatgctgaaccgcgcgccgacgcttcaccgtctgggcatccaggcgttcgagccg
gtgttgatcgagggcaaggcgatccagcttcacccgctggtctgctcggcgttcaacgcc
gacttcgacggcgaccagatggccgtgcacgttccgctgtcgctggaagcgcagctggaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgttccgtcgcaggacatggtgctgggcctgtattacctgtcgctcgaaaagcagaag
gaaccgggcgagggcatgatgctggcggacatggaggaggtccaccaggccctcttcgcc
ggtgccgtcacgctgcacaccaagatcatcagccgcgttccgcagaccgatgagaatggc
gagcagtatctcaagcgcttcgagacgacgccgggccgcatgctgctgggcgagacgctg
ccgaagagccacaaggtgcccttcgacatcgtcaaccgcgtcctgaccaagaaggacgtc
ggcgaggtgatcgacgaggtctatcgtcacaccggccagaaggagaccgtgctgttcgcc
gacgcgatcatggcgctgggcttccgtcacgcgttccgtgcgggcatctcgttcggcaag
gacgacatgatcatcgcgccggacaaggatcgtctggtcgatgagacgcgcgagcaggtg
aaggacttcgagcagcagtatcaggacggcctgatcacgcagcaggagaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggtcgcgaactcgatgatgaacgagatc
aaggcggtccggcattacgaggacggcccgatggaaggccgtgagaagccgatcaactcg
atctacatgatggcccactcgggtgcccgtggtagccccgcccagatcaagcagctggcg
ggcatgcgcggcctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcg
aacttcaaggaaggtctgaccgttcttgaatacttcaactcgacccacggcgcgcgtaag
ggcctggccgacacggcactgaagacggcgaactcgggttacctgacccgccgtctggtg
gacgtgtcgcaggactgcgtcatcatcgaagaggattgcggcacgacccgcgccctggag
atgaaggcgatcgtgcagggcggttcgaccatcgcctcgctcggcgagcgtatcctgggc
cgcaccacggccgaggacatcgtcaacgccaagaccggcgaagtcatcatcccgtcgggc
gtcctgctcgacgagccgatggtggcacggatcgaggcggcgaacacccagtcggtcaag
atccgcagcccgctggtctgcgaatcgaaggtcggtgtctgcggcaaatgctatggccgt
gaccttgctcgcggtacgccggtgaacatcggtgaagcggtcggcgtcatcgcggcgcag
tcgatcggtgagccgggcacgcagctgaccatgcgtaccttccacatcggtggtgcggcg
cagctgaacgagcagtcgaacctggaagcggcggtggacggtgtcgtccagttccgcgac
ctgcgcctgatcaccgaccagcgtggccgccgcgtggttctcagccgttcgggtgagatc
gcgatcgtggacatggacggccgcgagctctcggtcgaccgtatcccttacggtgcgtac
gtcctgttcgacgatggtcacatcgtgtcgaagggcgaccgcatggccgagtgggatccg
ttcaccatgccggtgatcacggaaaaccccggtacggtgaagttccaggaccttatcgag
ggcaagaccctgaccgagcaggtcgacgaagccacgggtatcgcccagcgcgtcgtcacc
gaatatcgcgcctcgaccaagtcgaaggaggatctgcgtccgcgcatgaccctgctcgac
gacaattcgggcgaggccggtcgctacatgctggcgccgggtgcgacgctctcggtcgag
gacggggcgcaggtgcagggcggtgacgttctggcccgtgtcgcgcgcgaatcggccaag
acccgcgacatcaccggcggtctgccgcgcgtcgccgagctgttcgaagcgcgtgttccc
aaggactcggcgatcatcgccaaggtctcgggccgtgtcgtgttcggcaaggattacaag
gcgaagcgcaagatcggcatccagcccgaggatggcggcgaggtcgtcgagtatctggtg
ccgaagtcgaaggtgatcgacgttcaggaaggcgactacgtcaagcgtggcgacaacctg
atcggcggttcgcctgatccgcacgacattctggaaacgatgggcgtggagccgctggcc
gaatatctggtcagcgaaatccaggaagtctatcgactccagggcgtgaagatcaacgac
aagcacatcgagacgatcgttcgtcagatgctgcagaaggtcgagatcaccgacggcggc
gacaccacgctgctgaagggcgagcaggtcgatcgcgaggaaatggacgcgatcaacgac
aagctcgacgccaaccaggtccgcgcgcagggcaagcccgtcctgctcggcatcaccaag
gcgtcgctgcagacccgtagcttcatctcggcggcgtcgttccaggagaccacccgcgtc
ctcaccgaggcggcggtccagggcaagcaggacacgctgatgggcctgaaggaaaacgtc
atcgtcggccgcctgatcccggcgggtaccggtgcgggcatgaaccgcctgcgcgtggcg
gcctccagccgcgacgcagcgctccgggcgcagcagcgcaagctggccgaggcgatcgtc
gcgccggtcagcgcggccgagcagcgggcggcggaaaacgcccgctccccgcgggaagac
gtcggcacgggcaacgatccgctggccgaggttgccccctcgggccacggcacggacgcc
gatgccggtgagtatctgaacgactga
DBGET
integrated database retrieval system
