Sphingomonas sp. LK11: AV944_17055
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Entry
AV944_17055 CDS
T04954
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV944_17055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
splk03019
]
AV944_17055
03009 Ribosome biogenesis [BR:
splk03009
]
AV944_17055
Enzymes [BR:
splk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AV944_17055
Messenger RNA biogenesis [BR:
splk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AV944_17055
Ribosome biogenesis [BR:
splk03009
]
Prokaryotic type
rRNA processing factors
AV944_17055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
KH_1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
APX67262
LinkDB
All DBs
Position
3691985..3694633
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AA seq
882 aa
AA seq
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MLIDARHREETRVAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEEAALRAELDAEDDDDHDGEDHDDHA
DDHHDDEDGEAAPRARKSTVNDDQVEALRQRRQNLRRRYKIQDVIHRRQVLLVQIVKEER
GNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKTIMAEMQLPSTMGCIV
RTAGLQRTKTEIKRDFDYLARLWDGIREKTLHSSAPALIYGDSDLIKRAIRDIYNREIEE
VIVEGEEGYRQAKDFMRLLMPAHARRVKQYADAVPLFQRAHVEDQLAAMYNPVVQLKSGG
YLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAQEIARQLRLRDMAGLVVIDFID
MDNNSNVRKVEKAMKEALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEASTRPCPHCEG
TGLVRTASSSGLSALRLIEDEAARGRGSILTLRASQEAAVYVLNRKRADIAEIEDRYGVT
VEIIPDREEEGARMTVEASGPPPAYAPKIDMLLPVEEDEDDLVDEIEEEEEDEVEEEATE
APRPRESRDEGDGNGRKRRRRRRGRRNRGEGEGSEQAEGEEQADDAEQHEAEQDETDAEE
SAEDDTAETVEATEAEPREGGRRRRGRRGRRGGRRGEGAANDTAETAAETVSDDDASDAP
LPIVEPIEAGDAAPVTTPLAVAEAEASDAPKTRRRPRARKAAPVVSETVETPVVEEAPAP
VAPVAEAEAEAPAKPKRVRKKAAPKVAAEEAAPVAEAEAEAPAKPKRVRKKAAPKVAVEP
VAEEAPAAEATPAEEPAATETDAENATGETPRRGWWQRTFGA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgacgcacgccaccgggaagaaacccgcgtggccgtcgtcaagggtaaccgg
atcgaggaattcgacttcgagtcggccgagcgcaagcagctcaagggcaatatctacctc
gccaaggtgacccgcgtcgaaccgtcgctgcaggcggccttcgtcgattacggcggcaac
cgtcatggcttcctggccttttcggaaatccaccccgactattaccagatcccgaaggaa
gatcgcgaagccctgctccgcgaagaggccgagcatgccgccgaagaggccgcgctgcgc
gccgaactcgacgccgaggatgatgacgatcatgatggcgaggatcatgacgatcacgcc
gacgaccatcatgacgatgaggacggcgaggccgcaccccgcgcccgcaagtcgaccgtc
aacgacgatcaggtcgaggcactgcgccagcgtcgccagaatctgcgccgccgctacaaa
atccaggacgtcatccatcgccgccaggtgctgctggtccagatcgtcaaggaagagcgc
ggcaacaagggtgcggcgctgaccacctatctgtcgctcgccggtcgttactgcgtactg
atgcccaacacgtcgcacggcggcggcatcagccggaagatttcgaacgcagccgaccgc
aagcgcctgaagaccatcatggccgagatgcagctgccctcgaccatgggctgcatcgtc
cgcaccgcgggccttcagcgcaccaagaccgagatcaagcgcgacttcgattacctcgcg
cgcctgtgggacggcattcgcgagaagacgctgcattcgtcggcacccgcgctgatctat
ggcgacagcgatctgatcaagcgtgcgatccgcgacatctataatcgcgagatcgaggaa
gtcatcgtcgagggcgaggaaggctatcgccaggcgaaggacttcatgcgcctgctgatg
cctgcgcacgctcgtcgggtgaagcaatatgccgatgccgtgccgctgttccagcgcgcg
catgtcgaggaccagctggccgcgatgtacaatccggtcgtccagctgaagtcgggcggc
tatctggtcatcaacccgaccgaagcactcgtctcgatcgacatcaactccgggcgctcg
acccgcgagcataatatcgagcagaccgcgaccgcgaccaatctggaagccgcgcaggaa
atcgcgcgccagctgcgtctgcgcgacatggcgggcctggtcgtcatcgacttcatcgac
atggacaacaattccaatgtccggaaggtcgagaaggcgatgaaggaggcgctgaagaac
gatcgcgcccgcatccaggtgggccgcatctcgtccttcggcctgatggaaatgagccgc
cagcgcctgcgcaccggcgtgctcgaagcctcgacccgcccctgcccgcattgcgagggc
accggcctggtccgcaccgcctcgtcctcgggcctgtcggcgctccgcctgatcgaggac
gaggccgcgcgcggtcgcggctcgatcctgacgctgcgcgccagccaggaagcggccgtc
tatgtgctgaaccgcaagcgcgccgacatcgccgagatcgaggatcgctacggcgtgacc
gtcgagatcatccccgaccgcgaggaggagggtgcgcgcatgacggtcgaggcctcgggc
ccgccgccggcctatgcgcccaagatcgacatgctcctccccgtcgaggaggatgaggac
gatctggtcgacgagatcgaagaggaagaagaggacgaggtcgaggaggaagcgaccgag
gcgccccgcccacgcgaatcgcgtgacgagggtgacggcaatggccgcaagcgccgccgc
cgccgtcgtggtcgccgcaaccgtggcgagggtgaaggcagcgaacaggccgagggcgaa
gagcaggcggacgacgctgagcagcatgaggccgagcaggacgagaccgacgccgaggaa
tcggccgaggacgacaccgccgagacggtcgaagccaccgaggccgagccgcgcgaaggc
ggacgccgccgtcgtggtcgtcgcggtcgccgtggcggtcgtcgtggcgagggtgccgcg
aacgacacggccgagaccgctgccgaaaccgtgtcggatgacgacgcgtcggacgcgccg
ctgccgatcgtcgagccgatcgaggcgggcgatgccgcaccggtgacgaccccactcgca
gtggccgaggccgaagcgagcgacgcgcccaagacccgccgccgtccgcgcgcccgcaag
gccgcgccggtcgtcagcgaaacggtcgagacgcccgtcgtcgaggaagcccctgctccg
gtcgcgccggtggcggaagccgaggcggaagctccggccaagcccaagcgtgtccgcaag
aaggccgctcccaaggttgccgccgaggaagccgctccggtcgccgaggcggaagccgaa
gccccggccaagcccaagcgcgtccgcaagaaggcggcccccaaggtcgccgtcgagccg
gtcgccgaggaagcccctgccgccgaggccactccggccgaggaaccggccgcgaccgag
accgacgccgaaaacgcgaccggggaaaccccgcgccgcggctggtggcagcgcaccttc
ggcgcctga
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