KEGG   Sphingomonas sp. LK11: AV944_17475
Entry
AV944_17475       CDS       T04954                                 
Name
(GenBank) DNA-binding protein HU
  KO
K03530  DNA-binding protein HU-beta
Organism
splk  Sphingomonas sp. LK11
Brite
KEGG Orthology (KO) [BR:splk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:splk03032]
    AV944_17475
   03036 Chromosome and associated proteins [BR:splk03036]
    AV944_17475
   03400 DNA repair and recombination proteins [BR:splk03400]
    AV944_17475
DNA replication proteins [BR:splk03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    AV944_17475
Chromosome and associated proteins [BR:splk03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    AV944_17475
DNA repair and recombination proteins [BR:splk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      AV944_17475
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_euk_1 HU-CCDC81_bac_2
Other DBs
NCBI-ProteinID: APX67817
LinkDB
Position
unnamed2:14804..15073
AA seq 89 aa
MNISELAKGVAASTGSSEADAKKAITAVFDQIAAAAAKGDEVSIPGFGKFAVKDRPERQG
RNPATGEAMTIAASKKVAFTAAKGLKDKL
NT seq 270 nt   +upstreamnt  +downstreamnt
atgaacatcagtgagctggccaagggcgttgcagcgtcgacgggctcgagtgaggccgac
gccaagaaggcgatcacggcggtcttcgatcagatcgcggccgctgcggcgaagggcgac
gaggtctcgatcccagggttcggcaagttcgccgtcaaggatcggccggagcgtcagggc
cgcaaccctgcgaccggcgaggccatgacgatcgccgcgtcgaagaaggtcgccttcacg
gccgccaagggcctgaaggacaagctctga

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