Sphingomonas sp. LM7: BXU08_03530
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Entry
BXU08_03530 CDS
T04824
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
splm
Sphingomonas sp. LM7
Pathway
splm03410
Base excision repair
splm03430
Mismatch repair
splm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
splm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BXU08_03530
03430 Mismatch repair
BXU08_03530
03440 Homologous recombination
BXU08_03530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splm03400
]
BXU08_03530
DNA repair and recombination proteins [BR:
splm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BXU08_03530
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BXU08_03530
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BXU08_03530
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AQR72869
UniProt:
A0A1S6FGV2
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Position
complement(756466..758232)
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AA seq
588 aa
AA seq
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MSSVLNIHRSILGQPWRWRGIAADARDPNFAPDDLVTQLLLTRGCPRDGIDDHRAPSIRA
FMPDPSIFRDMDKAAERLADAVEKGEQVAIFGDYDVDGATSAALLILLLRDLGLEARPYI
PDRLMEGYGPSGEALVRLHQQGASLIVTVDCGAQAFEALEMARSAGAEVIVCDHHKCAAE
LPVTYALINPNRLDEAEGAAFGHLAAVGVAFLLGAALIRSLRARGWFKDRAEPRLLDLLD
LVALGTVADVASLKGLNRAFVAQGLKVMAQRRNIGMNALIEASRLTRTPTCTDLGFALGP
RINAGGRVGCSDLGVRLLTTRDPDEARSIAEELNILNEERRAIEAEVQLAAEQLCIAKSN
RAVVVIASRGWHAGVIGIVAGRLKEKLGRPAIVIALDEHGIGKGSGRSIPGVDLGAAVLA
AKDSGLLHAGGGHAMACGVTIAEDQLEAFAEFLEERLAERVTVAMGERALLLDAVLAPGG
VNPDLVNAMDAGGPYGMGWPAPRVVAGPLSVLKADVVGSGGHVRLIVAGEDGRSLKAVAF
RHAETELGAALLSAPRHRKLWLAGRARIDDWGSRPAAELHVEDAAWAD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccgttctcaacatccatcggtcgatccttggccagccctggcgctggcgtggg
atcgcggccgatgcccgcgatcccaatttcgcccccgacgacctcgtaacccagttgctg
ctgacccgcggatgcccccgcgacggcatcgacgatcaccgcgccccgagcatccgcgcc
ttcatgccggatccctcgatcttccgcgacatggacaaggccgccgagcggctcgccgac
gccgtcgagaaaggcgagcaggtcgccatcttcggcgactatgacgttgatggcgccact
tctgcggcgctgctgatcctgctgctgcgcgatctcgggctcgaggcccgcccctacatt
cccgaccggctgatggaaggctatgggccctcgggcgaggcgctggtccgtctccaccag
cagggcgccagcttgatcgtcaccgtcgattgcggcgcgcaggccttcgaggcgctcgaa
atggccaggagcgccggcgccgaggtgatcgtctgcgatcatcacaaatgcgccgccgag
cttccggtcacctatgccctgatcaaccccaaccggctcgacgaagccgaaggcgccgca
tttggccatctcgccgcagtcggcgtcgccttcctgctcggcgccgcgctgatccgttca
cttcgcgcccgcggctggttcaaggaccgcgccgagccgcggctgctcgacttgctcgat
ctggtcgcactcggcaccgtcgccgacgtcgcatcgctcaaggggctcaaccgcgccttc
gtcgcgcagggcctcaaggtcatggcgcagcgccgcaacatcggcatgaacgcgctgatc
gaggcgtcgcgcctcacccgcacgccgacctgcaccgatctcggcttcgcgctgggcccg
cgaatcaatgccggcggccgcgtcggatgctccgatctcggcgtgcgcctccttaccacg
cgcgatccggacgaggcgcgctcgatcgcggaggagctcaacatcctcaacgaggagcgc
cgcgcgatcgaggccgaggtccagcttgccgccgagcagctgtgcatcgccaagagcaat
cgcgccgtcgtggtgatcgcgagtcgcggctggcatgccggcgtgatcggcatcgtcgcc
ggacgcctaaaggaaaagctcggccgcccggcgatcgtcatcgcgctggacgaacacggc
atcggcaagggttcgggccgctcgatcccgggcgtcgatcttggcgccgcggtgctggct
gccaaggattcggggctgctccacgccggcggcggccacgccatggcctgcggcgtgacg
atcgccgaggatcagctcgaagcctttgccgagtttctggaggaacgtctcgccgaacgc
gtgacggtggcgatgggcgagcgggcgctcctgctcgacgccgtcctcgccccgggcggg
gtcaacccggatctggtcaatgccatggacgccggcggcccctatggcatgggctggcca
gcgccgcgcgtggtcgcaggaccgctcagcgtgctcaaggccgatgtcgtcggctcgggc
ggacatgtccgcctgatcgtcgcgggcgaggacggtcgcagcctaaaggccgttgccttc
cgccatgccgagaccgagttgggcgctgcgctcctgtccgccccccgccatcgcaagctc
tggctcgccggccgcgccaggatcgacgactggggttcgcgccccgccgccgaattacat
gtggaagatgcggcttgggccgattga
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