Sphingomonas sp. LM7: BXU08_04825
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Entry
BXU08_04825 CDS
T04824
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
splm
Sphingomonas sp. LM7
Brite
KEGG Orthology (KO) [BR:
splm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
splm03016
]
BXU08_04825
Enzymes [BR:
splm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BXU08_04825
Transfer RNA biogenesis [BR:
splm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BXU08_04825
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AQR73089
UniProt:
A0A1S6FHG9
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All DBs
Position
complement(1035301..1036473)
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AA seq
390 aa
AA seq
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MHIHGLIEDSTALANLCARFANKPYICVDTEFMRENSYWPELCLIQIADDEEAAAVDPMG
GIDMTPLLELMTNNEDVLKVFHAGGQDIEIVYNLTGKTPHPLFDTQVAAMALGQGEQIGY
SNLVDTYLGITVDKGARFTDWSRRPLDKRQIDYAICDVTYLSEIFPRMLEKLKKTGRGAW
LDQEMERLADPENYRNDPDQAWQRVRVSSRKPEVLGRLKALARWREIEAQGKDLPRGRII
KDETLADLAGTPPRKQGDLAKVRGLSPAWGGNDIGGRLMAALDGAKPMSGDELPARDDRK
PALGKDGALVADLLKLLLKIRAKEINVAARLLARSDDLEALAAGVRTDLSILEGWRFEQF
GRDALELVEGQLGFTVRNGKLKMTRTEEPS
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgcatatccatggtcttatcgaggacagcaccgccctcgccaatctctgtgcccgtttc
gccaacaagccgtatatctgcgtggacacagagttcatgcgggaaaacagctattggccc
gagctctgcctcatccagatcgccgatgacgaggaagccgccgcggtcgatccgatgggc
ggaatcgacatgacgcctttgctcgagctgatgaccaacaacgaagacgtactcaaggtc
ttccacgccggcggtcaggacatcgagatcgtctacaatctcaccggcaagaccccgcac
ccgctgttcgacacccaggtcgcggcgatggcgctcggccagggcgagcagatcggctat
tcgaacctcgtcgacacctatctcggcatcaccgtcgacaagggcgcccgtttcaccgac
tggagccgccgcccgctcgacaagcgccagatcgattacgccatctgcgacgtcacgtac
ctctccgaaattttcccgcggatgctggagaagctcaagaagaccggtcgcggcgcctgg
ctcgaccaggagatggagcggctcgccgaccctgaaaattaccgcaacgaccccgaccag
gcatggcagcgcgtccgcgtctccagccgcaagcccgaagtgctcggccgcctcaaggcg
ctggcccgctggcgcgagatcgaggcgcagggcaaggatctgccgcgcggccgcatcatc
aaggacgaaacgctcgccgacctcgccggcacgccgccgcgcaagcagggcgatctcgcc
aaggtccgcggcctctcgccggcatggggcggcaatgacatcggcggacggctgatggcg
gcgctcgacggcgccaagccgatgtcgggcgatgaactgcctgcgcgcgacgaccgcaag
cccgcattgggcaaggacggcgcgctcgtcgcagacctgctcaagctgctgctcaagatc
cgtgccaaggaaatcaacgtcgccgcgcgcttgcttgcgcgctcggacgatctcgaggcg
ctcgccgcgggcgtacgcaccgacctgtcgatcctcgaaggctggcgcttcgagcagttc
ggccgcgacgcgctggaactggtcgagggtcagcttgggttcaccgtccgcaacggaaag
ctcaagatgacacgaaccgaggagccctcatga
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