Sphingomonas sp. LM7: BXU08_07670
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Entry
BXU08_07670 CDS
T04824
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
splm
Sphingomonas sp. LM7
Pathway
splm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
splm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BXU08_07670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
splm03021
]
BXU08_07670
03400 DNA repair and recombination proteins [BR:
splm03400
]
BXU08_07670
Enzymes [BR:
splm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BXU08_07670
Transcription machinery [BR:
splm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BXU08_07670
DNA repair and recombination proteins [BR:
splm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BXU08_07670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AQR73533
LinkDB
All DBs
Position
1667720..1672003
Genome browser
AA seq
1427 aa
AA seq
DB search
MNELTNFANPVAKPETFDQIQIGIASPDRIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLDAQDEYGEDAFTAG
IGAEAVKIMLMDLDLEGERKELLDELAVTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMEKTGEPGEGMLLGDMSEVHQALNA
GAVTLHTKITSRVPQTDEEGKQYLKRYETTPGRMLLGETLPQSHKVPFETVNRLLTKKDV
GDVIDEVYRHTGQKETVLFADAIMALGFRHAFKAGISFGKDDMIIPDAKVGMVDETKALV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAGAMMDEIKAVKRLPNGREAPINSIYMM
AHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVIMEEDCGTERALEMRAIVQGGSTIASLGERILGRTTA
EDVVDAKTNDVVIPSGTLLDEAMITQIEAIGIQGMKIRSPLVCEARIGVCGKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAPSDGKVEFRDVRMI
VDQRGRRVVTSRSAELAIVDMDGRELAVHRIPYGAYVLFDDGHIVSQGDRMAEWDPFTMP
VITENPGIVKYVEVIEGKTMTEQVDEATGIAQRVITENRGISAKKEDLRPRLTLTGESAE
EAGRYMLAPGAVLSVEDGAQVSAGDVLARVSRESAKTRDITGGLPRVAELFEARKPKENA
IIAKVSGRVVFGKDYKAKRKIGIMPEDGGEVVEYLVPKSKVIDVQEGDYVKRGDNLIGGS
PDPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEIIESGDTTL
LVGEQLDRDEMDEQNAKLEKGQTPAQGKPILLGITKASLQTRSFISAASFQETTRVLTEA
AVQGKQDTLLGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAALRVAQRRMNEATLIAPN
SAKEEHDAELARSTRDAGGTGDDALASVVPSGHGTDADAGDYLNKSE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaactgaccaacttcgcaaatccggtggccaagccggagaccttcgaccagatc
cagatcggcatcgcgtccccggaccgtatccgctcgtggtcgttcggcgagatcaagaag
ccggaaaccatcaattatcgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgagaagtgcggcgtcgaggtgaccgtctcgaaggttcgccgcgag
cggatgggccacatcgaactcgccgccccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctctac
ttcgagagctacatcgtcaccgagccgggcctgactccgctggaaaagttccagctcctc
accgaggacgaactgctcgacgcgcaggatgaatatggcgaggacgccttcactgccggc
atcggcgccgaagccgtcaagatcatgctcatggatctcgacctcgagggcgagcgcaag
gagctgctcgacgagctcgcggtcaccaagtccgagctcaagcccaagaagatcatcaag
cggctgaaggtcgtcgagagcttcatcgattcgggcaaccgtcccgagtggatgatcctc
gatgtcgttccggtcatcccgcccgagctgcgcccgctggtgccgctggacggcggccgc
ttcgcgacttcggatctcaacgatctgtatcgccgcgtgatcaaccgcaacaaccgcctc
aagcggctgatggagctgcgtgcgccggacatcatcgtgcgcaacgagaagcgcatgctt
caggaggccgtcgacgcactgttcgacaacggccgccgcggtcgcacgatcacgggcgcc
aacaagcgtccactcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaaccttctgggcaagcgcgtcgactattcgggccgttcggtcatcgtcaccggtccg
gagctcaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgcctcgacgccaagggtctctcgatgaccctcaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctggacgaagtgatccgcgagcac
ccggttctgctgaaccgcgcgccgacgcttcaccgtcttggcatccaggcgttcgagccg
gtcctgatcgaaggcaaggcgattcagctccacccgctggtctgctcggcattcaacgcc
gacttcgacggtgaccagatggccgtccacgtcccgctgtcgcttgaagcgcagttggaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctcagccccgcgaatggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggtctctactatctctcgatggagaagaccggc
gagccgggcgaaggcatgctgctaggcgacatgtccgaagtccaccaggcgctcaacgcc
ggtgcggtgaccttgcacaccaagatcaccagccgcgttccgcagaccgacgaagagggc
aagcagtacctcaagcgctacgagacgacgccgggccgcatgctgctcggcgagacgctc
ccgcagtcgcacaaggtgccgttcgagaccgtcaaccgcctcctcaccaagaaggacgtg
ggcgacgtgatcgacgaggtctatcgccacaccggccaaaaggagaccgtgctgttcgcc
gacgcgatcatggcactgggcttccgtcacgcgttcaaggcgggcatttcgttcggcaag
gacgacatgatcatcccggacgccaaggtcggcatggtcgacgagaccaaggcactcgtg
aaggattacgagcagcagtatcaggacggtctgatcacgcagcaggagaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggtggcaggcgccatgatggacgagatc
aaggcggtgaagcggctgcccaacggccgtgaagctccgatcaactcgatctacatgatg
gcccattcgggtgctcgtggttcgcaggcgcagatcaagcagcttgccggcatgcgcggc
ctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaaggaa
ggcctgaccgtcctcgaatacttcaactcgacccacggcgcccgcaagggcctcgcggat
accgcgctgaagaccgccaactcgggctacctcacccgccgcctcgtcgacgtgtcgcag
gactgcgtcatcatggaggaggattgcggcaccgagcgcgccctggaaatgcgtgcgatc
gttcagggcggctcgaccatcgcgtcgctcggcgagcgtattctgggtcgtacgactgcg
gaagacgttgtcgatgcaaagaccaacgacgtcgtcatcccgtcgggcacgttgctcgac
gaggcgatgatcacgcagatcgaagccatcggcatccaggggatgaagatccgctcgccg
ctggtctgcgaggcgcggatcggcgtttgcggcaagtgctacgggcgtgacctcgcgcgc
ggcactccggtgaacatcggtgaagcggtcggcgtcatcgcggcgcagtcgatcggcgag
ccgggcacccagctgacgatgcggaccttccacatcggcggcgcggcgcagctcaacgag
cagtcgaacctagaagcgccgtcggacggcaaggtcgaattccgcgacgtccgcatgatc
gtcgatcagcgtggccgccgcgtggtgacttcgcgttcggccgaactggcgatcgtcgac
atggacggccgcgagctcgcggtgcaccgcatcccgtacggcgcctatgtgctgttcgac
gatggccacatcgtctcgcagggcgaccgcatggcggagtgggatccgttcaccatgccg
gtgatcaccgagaaccccggcatcgtgaagtatgtcgaggtcatcgaaggcaagacgatg
accgagcaggtcgacgaagcgacgggcatcgcccagcgcgtcatcaccgagaaccgtggc
atctccgccaagaaggaagaccttcgtccgcgcctgaccctcaccggcgaaagcgccgag
gaggcaggccgctacatgctcgcaccgggcgcagtgctctcggtcgaggatggtgcgcag
gtgtcggcgggtgacgttctcgcccgtgtcagccgcgagtccgccaagacccgcgacatc
accggcggtctgccgcgcgtcgccgagctgttcgaagcccgcaagcccaaggaaaacgcg
atcatcgcgaaggtctcgggccgcgtcgtcttcggcaaggactacaaggccaagcgcaag
atcgggatcatgcccgaggacggcggcgaggtcgtggagtatctggtgccgaagtcgaag
gtgatcgacgtccaggaaggcgactacgtcaagcgtggcgacaatttgatcggcggctcg
cccgatccgcacgacatcctcgaagtgctcggcatcgagccgctcgcggaatatctcgtg
tcggaaatccaggaggtctatcgtctccagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcagaaggtcgagatcatcgagtccggcgacaccaccctg
ctggtgggcgagcagctcgaccgcgacgagatggacgagcagaacgccaagctcgaaaag
ggtcagacccccgcacagggcaagccgatccttctcggcatcaccaaggcgtcgctgcag
acccgcagcttcatctcggcggcgtcgttccaggagaccacccgcgttctcacggaagca
gccgtgcagggcaagcaggacaccctgctcggcctcaaggagaatgtgatcgtcggtcgt
ctgatcccggcgggcaccggcgcaggcatgaaccgcctgcgtgtcgcggcctcgtcgcgt
gatgcggcgcttcgggtggcccagcgccgcatgaacgaagccacgctgatcgcgccgaac
tcggcaaaggaagagcatgacgccgaactggcccgctccacgcgcgacgccggcggcacc
ggcgacgacgcgctggccagcgtggtcccctcgggccacggcaccgatgcggacgccggc
gattacctgaacaagagcgagtaa
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integrated database retrieval system
