Sphingomonas sp. LM7: BXU08_13595
Help
Entry
BXU08_13595 CDS
T04824
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
splm
Sphingomonas sp. LM7
Brite
KEGG Orthology (KO) [BR:
splm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
splm03016
]
BXU08_13595
Enzymes [BR:
splm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BXU08_13595
Transfer RNA biogenesis [BR:
splm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BXU08_13595
Prokaryotic type
tRNA splicing ligases
BXU08_13595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AQR75900
LinkDB
All DBs
Position
2949203..2950429
Genome browser
AA seq
408 aa
AA seq
DB search
MTEALYDFQHVEGGVPIKMWTRGVPVEDGARAQLARAAQMPFVFKHVAAMPDVHIGIGAT
VGSVIPTKGAVIPAAVGVDIGCGMMAARTSLVASDLPDNLEGIRSAIEQAVPHGRDVGRG
KRDKGSWGDPPAAIVEAWATLALRFDRIVEKYPKLKNTNNLVHLGTLGTGNHFIELCLDQ
DQRVWVMLHSGSRGIGNAIGSYFIELAKQDMRKWHINLPDENLAYFPEGTDHFDDYVEAV
GWAQDFAALNRRMMMTNVIRALRGQIAKPFDAELEAVNCHHNYVQRENHFGENVLVTRKG
AVRAAKGVLGIIPGSMGAKSFIVRGLGNPESFDSCSHGAGRVMSRTAAKKLVTLDEHIRD
TAGVECRKDEGVIDETPKAYKPIEAVMAAQADLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggctttgtatgatttccagcatgtcgaaggtggcgtgccgatcaagatgtgg
acccgcggtgtgccggtcgaggacggcgcacgcgcccagcttgcacgtgcggcgcagatg
ccgttcgtgttcaagcatgtcgccgcgatgcccgatgttcatatcggcatcggcgcgacc
gtgggctcggtgatcccgaccaagggtgctgtgatcccggcggcggtaggtgtcgacatc
ggctgcggcatgatggcggcacgcacctcgctggtggcaagcgacctgcccgacaatctc
gagggcatccgctccgcgatcgagcaggcagtgccgcacggtcgtgacgtcggccgcggc
aagcgcgacaagggctcgtggggcgatccgcccgcggcgattgtcgaggcttgggcaacg
cttgcgctgcgcttcgaccggattgtcgaaaagtacccgaagctcaagaacaccaacaat
ctggtgcacctgggcacgctcggcaccggcaaccacttcatcgagctgtgccttgatcag
gaccagcgcgtgtgggtgatgctccattcgggttcgcgcggcattggcaacgcgatcggc
agctacttcatcgagctggcgaagcaggacatgcgcaagtggcacatcaacctgcccgac
gagaacctcgcctatttcccggaggggaccgatcatttcgacgactatgtcgaggcggtc
ggctgggcgcaggacttcgcggcactgaatcggcggatgatgatgaccaatgtcatccgc
gcactgcgggggcagattgccaagccgttcgacgcggagcttgaggcagtcaattgccac
cacaactacgtccagcgcgaaaatcacttcggtgagaatgtgctggtcacccgcaagggc
gcggttcgcgcggcgaagggcgtgctgggcatcattcccggctcaatgggcgccaagtcg
ttcatcgttcgggggctcggcaaccccgaatcgttcgacagctgcagccatggcgcggga
cgcgtgatgtcccgaaccgcagccaagaagctggtgacgctcgacgagcacatccgcgac
actgcgggtgtcgaatgccgcaaggacgaaggcgtgattgatgagacgccgaaggcgtac
aagccgatcgaggccgtgatggcggcgcaggccgacctggtcgagatcgtccatacgctc
aagcaggtggtgtgcgtgaagggctaa
DBGET
integrated database retrieval system
