Sphingomonas sp. LM7: BXU08_15475
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Entry
BXU08_15475 CDS
T04824
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
splm
Sphingomonas sp. LM7
Pathway
splm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
splm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BXU08_15475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
splm03019
]
BXU08_15475
03400 DNA repair and recombination proteins [BR:
splm03400
]
BXU08_15475
Enzymes [BR:
splm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BXU08_15475
Messenger RNA biogenesis [BR:
splm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BXU08_15475
DNA repair and recombination proteins [BR:
splm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BXU08_15475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AQR74869
LinkDB
All DBs
Position
complement(3298976..3300751)
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AA seq
591 aa
AA seq
DB search
MKAPLDILRKTFGFPGFRGVQPQVIDRVMAGANTLAVMPTGAGKSLCYQVPSLALDGTCV
VVSPLIALMHDQLRAAEAVGIRAATLTSVDENREETIARFRAGELDLLYVAPERASGEGF
RNLLTQTRLSLFAIDEAHCVSEWGHDFRPDYRLLRPLLDRFAEVPRLALTATADAHTRAD
ICEQLGIPIDGMIVAGFDRPNIRYTITARDNSTRQIIDLIAEQPGPGIVYAQTRAGVEKL
ADKLAETGRSVLPYHAGLDPAVRRRNQAAFVASEDMVVVATVAFGMGIDKPDVRFVAHAG
LPKSIEAYYQETGRAGRDGDPAVAHLFWGAEDFARARQRIGEVDAGRQAGERTRLSALGA
LVETGGCRRRILLRHFGEDASESCGNCDNCLNPPAAVDVTVTAQKFLSAVFRTGMMFGTG
YIESILLGQSSERSMTNGHEQLSVFGIVDGDEAALLKPVARALLLRDALRANAHGGLEFG
PGARPLLKGETDLKLVLPPKRERRTKRGRTAAGGDANPIGNPLFEALRAKRREIAMEAGL
PPYVIFHDSVLRDMALARPGTLGELGQLSGVGARKLEAYGDTFLQVIREAA
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagcgcccctggacatcctccgtaaaaccttcggcttccccggctttcggggggtg
cagcctcaggtgatcgatcgggtgatggccggcgccaacactttggcggtgatgccgacc
ggcgcgggcaaatcgctatgctatcaggtgccaagcctggcgctcgacgggacgtgcgta
gtcgtctcgccgctgatcgctttgatgcacgaccagctgcgcgccgccgaagccgtgggc
atccgtgcggcgacgctgacctcggtcgacgagaatcgcgaggagacgatcgcgcgcttc
cgcgccggcgagctcgatcttctctatgttgcgccggaacgcgcttcgggcgagggcttt
cgcaacctgctgacccagaccaggctcagtctcttcgcgatcgacgaggcgcattgcgtc
tccgaatgggggcatgatttccgccccgactaccggctgctgcggccgttgctcgatcgc
ttcgcagaggtgccgcggctggcgctcaccgcgaccgccgatgcgcatactcgcgccgat
atctgcgagcagctgggcattccgatcgacgggatgatcgtcgcggggttcgatcggccc
aatatacgctacacgatcaccgcgcgcgacaattcgacgcgccagatcatcgacctgatc
gccgagcagccgggccccggaatcgtctacgcacagactcgcgctggcgtggagaagctg
gccgacaaactcgccgagaccggacgtagcgtgctgccctatcatgccgggctcgatccc
gcggtgcgccgccgcaaccaggccgcgttcgtcgccagcgaggacatggtcgtggtcgcg
acggtggcgttcggcatgggaatcgacaagcccgacgtccgcttcgtcgcacatgccggc
ctgcccaagtcgatcgaagcctattatcaggagaccggccgcgccggccgcgacggcgac
cccgcagtcgcacacctcttttggggtgccgaggattttgcgcgggcgcgccagcggatc
ggcgaagtcgatgccgggcggcaggcaggcgaacgcacgcggttgtcagcgctgggcgcg
ctggtcgagactggtggctgccgccggcgcatcctgctccgccatttcggcgaagacgcg
tcggagagctgcggcaattgcgacaattgcctcaatccgcccgcggcagtcgatgttacc
gtaaccgcgcagaaattcctgtcggcggtgttccgcaccggcatgatgttcggcaccggc
tatatcgagtcgatcctgctcggccagtcgagcgagcgcagcatgacgaacgggcacgag
cagctctcggtgttcgggatcgttgatggcgacgaggcggcgctgctgaagcccgtggcc
cgcgcgctgctgctgcgcgacgcactgcgggccaatgcccatggcgggctcgagttcggt
ccgggcgcgcggccgctcctcaagggcgagaccgatctcaagctcgtgcttccgcccaag
cgcgagcggcgaaccaagcgcggacgcaccgcggccggcggcgacgccaatccgatcggc
aacccgctgttcgaggcgcttcgcgccaagcgccgcgagatcgcgatggaagcgggactg
ccgccctatgtgatcttccacgattcggtgctgcgcgacatggcgttggcgcggcccggg
acgttgggcgaactgggtcaactctcgggcgttggcgcgcgcaagctcgaggcttatggt
gacacgttcctgcaggtaattcgcgaggcggcatga
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