Sphingomonas sp. LM7: BXU08_17800
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Entry
BXU08_17800 CDS
T04824
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
splm
Sphingomonas sp. LM7
Pathway
splm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
splm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BXU08_17800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
splm03019
]
BXU08_17800
Enzymes [BR:
splm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BXU08_17800
Messenger RNA biogenesis [BR:
splm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BXU08_17800
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DUF6362
Motif
Other DBs
NCBI-ProteinID:
AQR75273
LinkDB
All DBs
Position
complement(3782066..3783538)
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AA seq
490 aa
AA seq
DB search
MQFKELGLSQTVLTALATKGYTEATPIQAQSIPSLLEGRDLLGIAQTGTGKTAAFMLPSI
DRLIASGKRAQPRGCRMLVLAPTRELASQIADNARHYAKGTPLSVATIFGGTSIHKNKTD
LARGVDIVVATPGRLVDLMDQHYAILLGIEILVLDEADQMMDLGFIHALKRIVRDLPTKR
QTLFFSATMPKTIRELAGQFIKNPVEVKVTPEATTAERVEQQVTFVAQAEKQALLTLALR
DPSIDRALVFTRTKHGADRVVRLLGGNGVASNAIHGNKSQPQRERALGEFRSGKVKILVA
TDIAARGIDVSGVSHVFNFELPNVPDQYVHRIGRTARAGATGLAISYCADDERPYLKDIE
KLTRQKLTIVPLPADFINESNKIKSTRSPMPVGRDEQNGRNGRAMQQGGRSGGGQRPGQG
QGQGQRREGQPFGDRRPAQAGGERSGEQRRNDAPRGDRPAGDAPRNYARPKGKFHARPAR
PANAGGGRGR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcaaagaactcggtctctcgcagaccgttctcaccgcgctcgccaccaagggt
tacaccgaggcgacgccgatccaggcacagtcgatcccgtcgctgctcgaaggtcgcgac
ctgctcggcattgcccagaccggcaccggcaagaccgcggctttcatgcttccctcgatc
gaccggctgatcgcttcaggcaagcgcgcccagccgcgcggttgccgcatgctcgtcctc
gcgccgacgcgtgaactcgccagccagatcgccgacaatgcccgccattatgccaagggc
acgccgctcagcgtcgccacgatcttcggcggcacgtcgattcacaagaacaagaccgat
ctcgcccgcggcgtcgatatcgtcgtcgccaccccgggccgtctcgtcgacctgatggat
cagcactatgcgatcctgctcggcatcgagatcctcgtgctcgacgaagccgaccagatg
atggatctgggcttcatccacgcattgaagcggatcgtccgtgatcttccgaccaagcgc
caaaccctgttcttctcggcgacgatgcccaagacgatccgcgagctcgccggccagttc
atcaagaaccccgtcgaagtgaaggtcacgcccgaggcgaccaccgccgagcgcgtcgag
cagcaggtcactttcgtcgcgcaggccgagaagcaggcgctgctgacgctggcgctgcgc
gatccgagcatcgatcgtgcgctggtgttcacccgcaccaagcacggcgccgaccgcgtc
gtccgcctgctcggcggcaacggcgtcgcgtcgaatgcgattcacggcaacaagagccag
ccgcagcgcgagcgcgcgctgggcgagttccgcagcggcaaggtcaagatcctcgtcgca
accgacatcgctgcacgcggcatcgatgtctcgggcgtcagccatgtgttcaacttcgag
ctgccgaacgtgccggaccagtatgtccaccgcatcggccgcaccgcgcgcgccggcgcg
acgggtctcgccatcagctattgcgccgatgacgagcgtccgtacctcaaggacatcgag
aagctgacgcgccagaagctgacgatcgtgcctttgccggccgacttcatcaacgaatcg
aacaagatcaagtcgacgcgctcgccgatgccggtgggccgcgacgagcagaacggccgc
aatggccgcgcgatgcagcagggcggccgctccggtggcggccagcgtcccggccagggc
cagggccagggccagcgccgcgagggtcagcccttcggcgatcgccgtccggcgcaagcc
ggtggcgagcgttcaggcgagcagcgccgcaacgacgccccccgcggcgatcggcccgcc
ggcgacgccccccgcaactatgcgcgtcccaagggcaagttccacgcccgtccggcgcgc
ccggccaatgccggcggcggtcgcgggcggtaa
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