Sphingomonas sp. LM7: BXU08_18730
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Entry
BXU08_18730 CDS
T04824
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
splm
Sphingomonas sp. LM7
Pathway
splm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
splm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BXU08_18730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
splm03021
]
BXU08_18730
03400 DNA repair and recombination proteins [BR:
splm03400
]
BXU08_18730
Enzymes [BR:
splm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BXU08_18730
Transcription machinery [BR:
splm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BXU08_18730
DNA repair and recombination proteins [BR:
splm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BXU08_18730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
HHH_XRCC3_RpoA
IDH
Motif
Other DBs
NCBI-ProteinID:
AQR75415
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All DBs
Position
3984379..3985449
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AA seq
356 aa
AA seq
DB search
MSVNPKNWQELKKPNGLEKKAGGDPKRKSTFVAEPLERGFGLTLGNALRRVLLSSLQGAA
VTSIKIENVLHEFSSLAGVREDVTDIVLNVKQIAIRMQGEGPKRLQLSATGPAEVKAGDI
AVSGDIEVMNPELVICHLDDGATLNMELTADTGKGYVPAQSNRPADAPIGLIPVDALYSP
VRQVSYKVENTRVGQELDYDKLTLTVETDGTITPEDGLAYAARILQDQLSLFVHFDDSAV
TRSAPIGMAAPAAAEGGVASGDTAQINRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQ
KTEAEMLRTPNFGRKSLNEIKEVLSSMGLRLGMEIPGWPPENIEEMAKKLEQEIMG
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggtgaaccctaagaactggcaggaactcaagaagcccaacggcctcgaaaagaag
gccggtggcgatcccaagcgcaagtcgaccttcgtggccgagccgctcgagcgcggtttc
ggccttacgctcggtaatgcgctgcgtcgtgttttgctctcgtcgctccagggcgccgcg
gtcacgtcgatcaagatcgagaacgtccttcacgaattctcgagcctcgccggcgtccgt
gaggacgtgacggacatcgtgctcaacgtgaagcagatcgctatccgcatgcagggcgaa
ggcccgaagcggctccagctttcggctaccggccccgcagaagtgaaggccggcgacatc
gccgtttcgggcgacatcgaagtgatgaaccccgagctggtgatctgccatctcgacgac
ggtgcgacgctcaacatggagctgactgccgacacgggtaagggctatgtccccgcccag
tcgaaccgtccggcggatgcgccgatcggcctgatcccggtcgacgcgctgtacagcccg
gtccgccaggtttcgtacaaggtcgagaacacccgcgtcggtcaggagctcgattatgac
aagctcacgctgaccgttgagaccgacggcacgatcaccccggaagacggcctcgcttat
gcggcgcgcatcctccaggatcagctctcgctgttcgtgcacttcgacgattcggcggtt
acccgctcggcgccgatcggcatggctgctccggcggccgcagaaggtggcgtcgcttcg
ggcgataccgcgcagatcaaccgttaccttctcaagaaggtcgacgagctcgaactgtcg
gtgcgctcggccaactgcctcaagaacgacaacatcatctatatcggcgatctggttcag
aagaccgaagccgagatgctgcgcacgccgaacttcggccgcaagtcgctcaacgagatc
aaggaagtcctttcgagcatgggtctccgcctgggcatggaaatccccggctggccgccc
gaaaacatcgaagagatggccaagaagctcgagcaggagatcatgggctaa
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