Streptococcus pluranimalium: C0J00_00035
Help
Entry
C0J00_00035 CDS
T06892
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
splr
Streptococcus pluranimalium
Pathway
splr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
splr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C0J00_00035 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splr03400
]
C0J00_00035 (mfd)
Enzymes [BR:
splr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C0J00_00035 (mfd)
DNA repair and recombination proteins [BR:
splr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C0J00_00035 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_16
AAA_22
RecG_dom3_C
AAA_5
AAA_25
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AUW95663
UniProt:
A0A2L0D1J5
LinkDB
All DBs
Position
5458..8964
Genome browser
AA seq
1168 aa
AA seq
DB search
MAKLGLTDLLAQNKTIQNWLGQVETGRQLVMGLSASSKALAIATAFQYHQGKMIIVTSTQ
NEAEQLISDLSALLDEKYIYSFFADDVAAAEFIFSSLDRTLSRLESLNFLQNETSTGILV
TSIIGTKILLPNPKAYHRAQIKLSIGVDKEIDNLVKNLSQMGYERVNQVLSPGEYSRRGN
ILDIYEVTENYPFRIEFFGDEIDGIRTFDSESQKSLDSLEDVTISPATDIILEQGDFERA
TIKLEEELDKSLNDDLKNYLTDVLSVTKDGYRHKDIRRFLSFFYQKNYSLFDYFTKGTIL
FVDDFQKLMDRHARFEMEVANLLTDDLQQCKAVSSQIYFADTYQSLRQYQPASFFSNFHK
GLGNIKFDALRNMTQYPMQEFFNQFPLLVDEIHRYQKQKATILVQVDSQKSLDSLQETLK
EYNLELLITDAQEIIPHQAQFIIGNLSTGFYLADEKLVLITEREIFHKKIKRRARRSNIS
NAERLKDYNELEKGDYVVHQVHGIGKFLGIETLEIKGIHRDYLTIQYQNSDRISLPIEQI
ESLSKYVSADGKEPKINKLNDGRFQKTKQKVTKQVEDIANDLLKLYAERSQLKGFAFSPD
DDNQREFDDDFAYAETEDQLRSIAEIKKDMEADKPMDRLLVGDVGFGKTEVAMRAAFKAV
NDGKQVAILVPTTVLAHQHYVNFKERFDNQAVNIEELSRFRSKKEQTAILEELSKGQIDI
IIGTHRLLSKDVTFSDLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMS
MLGIRDLSVIETPPTNRYPVQTYVMETNLGMVREAILRELDRGGQVFYVYNKVDTIEQKV
AELQELVPEASIGFVHGQMSEIQLENTLLDFIAGVYDVLVATTIIETGVDISNVNTLFIE
NADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGFKIA
MRDLSIRGAGNILGASQSGFIDSVGFEMYSQLLEDAILKKQGKSQVRQKGNAELNLQIDA
YLPMDYISDERQKIEIYKRIREIDSRAAYEELQDELIDRFGEYPDQVAYLLEIGLVKSYL
DSIFTELVDRKENQLVVRFEKVTQTLFLTQDYFEALSKTNLKARISEHQGKIEVIFDIRN
KKDYEILEELIQFGQGFADIKERKMENK
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggctaaattaggattaacggatttattagcacaaaataaaaccattcaaaattggctt
ggacaggtagaaacagggcgtcaactagtcatgggcctctctgcttctagtaaggctctg
gctattgcaacagcctttcagtatcatcaaggaaagatgattatcgtaacctcaacccaa
aatgaagcggaacagctaatcagtgatttatcagcactattagatgaaaaatacatctat
agtttttttgctgatgatgtcgccgctgcagagttcattttttcatcacttgatcgtacc
ttatctcgtctagagagtttaaactttctccagaacgagacctcaacaggtattttggtg
acttctattattggtactaaaatactattaccaaaccctaaagcataccacagagcacaa
ataaagttgtcaattggagttgacaaagaaattgacaatcttgtcaaaaatctatcccaa
atgggatatgaacgtgtcaatcaagtattgagcccaggagagtacagtcgtagaggtaac
attctagatatttatgaagttactgaaaattatccttttaggattgaatttttcggtgat
gaaattgatggtattcgtacatttgatagtgaaagtcagaaatctctggatagtttagaa
gacgttacaatttcaccagctactgacattattttagagcaaggtgattttgaacgtgcg
accattaaactagaagaggaacttgacaagagtctcaatgatgacttgaaaaattatctc
actgatgttttatcagtaacaaaagatggctatcgtcataaggatattcgtcgttttttg
agtttcttttatcaaaaaaactatagcctttttgattattttaccaagggtacgattctt
tttgtggatgattttcaaaagttgatggatcgtcatgctcgctttgaaatggaagtggct
aatttattgacagatgatttacagcaatgtaaagctgtatcaagtcagatctattttgcc
gatacctatcaaagtctaagacaatatcaaccggcaagtttcttttcgaattttcataag
ggactggggaatatcaaatttgatgccctgcgtaacatgactcagtatcctatgcaggaa
ttcttcaatcagtttccacttttggtagatgaaattcatcgctatcagaagcaaaaagca
acgattttagtacaagtagattcccaaaaatctctggatagtctgcaagaaacgttaaaa
gaatataacctggaacttctcattacagatgctcaggagattatacctcatcaggcacaa
ttcattattgggaatctatcaactggattttatttagctgatgaaaaattagttttaatt
accgaacgtgagattttccataaaaaaatcaaacgtcgcgctcgtcgttctaacatttct
aatgctgaacgcctaaaagattataatgagcttgaaaagggcgattatgttgtccatcaa
gttcatggtattgggaaatttctgggaatcgaaacactagaaataaagggtatccatcgt
gattatctgaccattcagtatcaaaattctgatcgtatttccttaccgattgagcagatt
gaaagtctgtcaaaatacgtttcagctgatggcaaagaacctaaaattaataaacttaat
gatggtcgtttccaaaaaaccaaacaaaaagttaccaagcaagtagaagatattgcaaat
gatttgctaaaactatatgctgaacgcagtcaattaaaaggttttgctttttctccagat
gatgacaatcaacgagagtttgatgatgattttgcctatgctgagacagaagatcaactc
cggtcaattgctgaaatcaaaaaagacatggaagctgacaagcctatggatcgtctcttg
gttggtgatgttggatttggtaaaaccgaagtagccatgcgagcagcctttaaagctgtc
aatgacggcaagcaagtcgctattttagtaccaacgactgtgctagcgcatcaacactat
gtcaactttaaagagcgttttgacaaccaagctgtcaacattgaggaactaagtcgtttt
agaagtaagaaagaacaaacagctattttagaagaattatctaaaggtcaaattgatatc
atcattggtacccatcgcttactttctaaggatgtcaccttttcagatttgggtctcatt
gtcattgatgaagaacaacgttttggtgtcaaacacaaagagaccttaaaagaattaaaa
actaaagttgacgttttgactctgacagcaacaccgattcctcgtacccttcacatgtct
atgctagggattcgagatttatcagttattgaaacccctccaaccaatcgttacccagtt
cagacttatgttatggaaactaatctaggtatggttcgtgaagccattttgcgtgagtta
gaccgtggaggacaggttttttatgtttataataaggttgacaccattgaacaaaaagta
gcagaattacaagaactggtcccagaggcaagtatcggttttgttcatgggcaaatgagc
gagattcagctggaaaataccttgttagactttattgctggagtttacgatgttttggta
gctacaactattattgaaacaggagttgatatttctaatgtcaataccctctttattgaa
aatgcagaccatatgggtctgtcaaccttgtatcaacttcgtggacgtgttggccgttct
aatcggattgcttatgcctatctcatgtatcgacctgataaggttctgactgaggtgtca
gaaaaacgtttggatgctattaaaggctttacagaactgggttcaggctttaaaattgcc
atgcgtgacttgtctattcgtggtgctggtaatattttaggtgcttcacaaagtggcttt
attgattctgttgggtttgaaatgtattcgcaactcttagaagatgccattttgaagaaa
caaggaaaatcgcaagtgcgtcaaaaaggaaacgccgagcttaatttacagattgatgcc
tatctaccaatggattatatttcggatgaacgtcagaaaattgaaatctacaaacgtatt
cgagagattgattcacgcgctgcctatgaagaacttcaagatgagttgattgaccgtttt
ggagagtatcctgatcaagttgcctatttactagaaattggccttgtcaaatcttacctt
gacagcatctttacagaactagttgaccgtaaagaaaatcagttggttgttcgttttgaa
aaagtcacacagaccctctttttaacccaagattattttgaagccctatcaaaaaccaat
ctcaaggctcgcatcagtgaacaccaaggaaaaattgaagtcatttttgatattcgtaac
aaaaaagattacgagattttagaagaattgatccagtttgggcaaggatttgctgacatt
aaagaacggaaaatggaaaacaaataa
DBGET
integrated database retrieval system
