Spiroplasma platyhelix: SPLAT_v1c04930
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Entry
SPLAT_v1c04930 CDS
T08168
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
splt
Spiroplasma platyhelix
Pathway
splt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
splt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPLAT_v1c04930 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
splt03019
]
SPLAT_v1c04930 (deaD)
03009 Ribosome biogenesis [BR:
splt03009
]
SPLAT_v1c04930 (deaD)
Enzymes [BR:
splt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPLAT_v1c04930 (deaD)
Messenger RNA biogenesis [BR:
splt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPLAT_v1c04930 (deaD)
Ribosome biogenesis [BR:
splt03009
]
Prokaryotic type
rRNA helicases
SPLAT_v1c04930 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
MCR_C
Motif
Other DBs
NCBI-ProteinID:
UJB29257
LinkDB
All DBs
Position
535815..537212
Genome browser
AA seq
465 aa
AA seq
DB search
MNFNELNLKKELNLAIANLGHTTPTPIQNLSIPVILQNRDIFGKSHTGTGKTAAFVLPIL
NMLDTNVFKNQTLIVCPTRDLSIQIYQEIKKYAMYLKNVRIALLVGGSSMSRQLSDLRSS
NIVVGTPGRIVDHINRRTLKLGFLKTIVLDEADEMLKMGFKEKIDEIFSAAPDNTQTVLF
SATISKPILKITADYQTNPVAINLNNELQTQEDKNIKQFYFDTKNNHKEKALIALYKELN
PKLSIIFSNTKAYTNKLQDLLKQNGIDSVTITGDKRQRERELAMKQFKSGKVNVLIATDL
VARGIHVDGIDYIFNFDIPREKEYYTHRIGRTARAGATGTAITLVRNKNDYFELKNIEKL
QDQPINKLEIESNLLDFKEYKENRDTREPRGNREYRSNSEYRGNRDSRSNSEYRGNREPR
SNSEYRGNRDSRDTRNNKDSREPRKFKDFKKFKNNNSRNYSKRYN
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaatgaactaaacctaaaaaaagaactaaacttagctattgctaatttagga
cacactacaccaactccaatccaaaacctttctattcctgtaattttacaaaatagagat
atctttggtaagagtcacacaggaacaggaaaaactgctgcttttgtgctaccaatttta
aatatgttagatactaacgtatttaaaaaccaaactttaattgtttgtccaactagagac
ctatcaattcaaatctatcaagaaattaaaaaatatgcgatgtatttaaaaaatgtaaga
atcgctttattagttggtggatctagtatgagtagacaactaagtgatttaagaagtagc
aacattgttgttggaacaccaggaagaattgttgatcacatcaatcgtagaactttaaaa
ctaggatttttaaaaactattgttttagatgaagctgatgaaatgctaaaaatgggattc
aaagaaaagattgatgaaatctttagcgctgcaccagataatacccaaacagtattattc
tctgcaactatctctaaacctattttaaagattactgctgactatcaaactaatcctgta
gcaattaaccttaataacgagttacaaactcaagaggataaaaatatcaaacaattttat
tttgatactaaaaataaccacaaagaaaaagctttaatcgctttatacaaagaattaaac
ccaaaattaagtatcatcttttcaaatactaaagcctacactaacaagttacaagactta
ttaaagcaaaatggcattgattctgtaactatcactggtgacaagcgacaaagagaacgt
gaactagcaatgaaacaatttaaatctggtaaggttaatgttttaattgctactgactta
gtagctcgtggaatccacgttgatgggattgattacattttcaactttgatattccaaga
gaaaaagaatactatactcaccgtattggtagaacagcaagagctggagctactggtact
gcaatcactttggttagaaataaaaatgattattttgaacttaaaaatattgaaaagtta
caagatcaaccaatcaataaattagaaattgaatcaaatttattagattttaaagaatac
aaagaaaatagagacactagagaacctagaggcaatcgagaatatagaagcaacagcgaa
tatagaggcaatagagattctagaagtaacagcgaatatcgtggtaacagagaacctaga
agcaatagtgaatatagaggcaatagagattctagagacactagaaacaataaagactct
agagaacctagaaaatttaaagactttaaaaaatttaaaaacaataattcaagaaactat
agcaaaagatataattaa
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