Streptomyces pluripotens: LK06_019805
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Entry
LK06_019805 CDS
T04845
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
splu
Streptomyces pluripotens
Pathway
splu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
splu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LK06_019805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splu03400
]
LK06_019805
Enzymes [BR:
splu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK06_019805
DNA repair and recombination proteins [BR:
splu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LK06_019805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ARP71820
UniProt:
A0A221P1G8
LinkDB
All DBs
Position
4376067..4379633
Genome browser
AA seq
1188 aa
AA seq
DB search
MSLHGLLDAVVKDAALAEAIRAAADGNRMHVDLVGPPAARPLAVAALARETGRPVLAVTA
TGREAEDLAAALRSVLPAEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSPDDP
ETGPVSVVVAPVRSVLQPQVRGLGDLEPVSLRTGWTADLDDVVKALSAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRARARALAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARERDMM
WWSVSPFAADEALTDPLAADAAGDTLKLGMHAPDSYRGDTAKALADTKGWLADGWRAVFV
TEGHGPAARTVEVLGGEGIPARLDSDLGQISPSVVHVACGSIEYGFVDPALRLAVLTETD
LSGQRAAGRDGARMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLV
VEYAPAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAA
DLIKLYSARMAAPGHAFGGDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLI
CGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVTVRALSRF
QTDTEAKAVLEGLHDGAVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLR
ANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYDEKQIGAAIRREL
LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEAALEQVVVDFWEKRFDVLV
STTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETA
HERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADY
RRQLETGEAGAGVEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDVKAV
REELSDRYGKLPEPVENLLLVAGLRMLARACGVSEIVLQGTNIRFAPVELRESQELRVKR
LYPGTVIKPAAHQVLVPRPKTARVGGKPLVGRELLAWVGEFLASVLGS
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcatggtctgctcgacgccgtagtcaaggacgccgccctcgcggaagcgatt
cgggcggcggcggacggcaaccgcatgcacgtcgacctcgtcgggccgccggcggcccgt
ccgctcgcggtcgcagccctcgcccgcgagaccggccgcccggtgctggcggtcacggcg
acgggccgggaggccgaggatctggccgccgccctgcgctccgttctgcctgccgagggt
gtggtggagtacccctcctgggaaaccctcccgcacgagcggctgagcccgcgcagtgac
accgtgggccgtcgcctcgccgtcctgaggcgcctcgcccaccccagcccggacgatccc
gagaccggcccggtctccgtggtcgtagcgcccgtgcgttccgtgctgcagccgcaggtc
aggggtcttggcgacctggagccggtgtccctgcggaccggctggacggccgacctggac
gatgtcgtgaaggccctctcggcagcggcttacgcgcgcgtggagctcgtcgagaagcgt
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccacccactgaggaacacccc
ctgcgcatcgagttctggggcgatgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctcgctcgaagtcgccgaacacggcctgtgggctccgccctgccgcgagctgctg
ctcaccgacgacgtacgcgcccgtgcgcgtgccctcgccgaggaacaccccgagttgggc
gagctgctcggcaagatcgccgagggcatcgcggtcgagggcatggagtccctggcgccg
gtcctggtcgacgacatggaactactgcttgacgtgctgcccaagggcgcgatggctgtc
gtctgcgatccggagcgggtccgcacgcgggccgccgacctcgtggccacttcgcaggag
ttcctgcaggcgtcgtgggcggccactgcgggcggaggcgaggcaccgatcgatgtcggc
gcggcctccctgtggtccatcgcggacgtccgagaccgggcacgcgaacgggacatgatg
tggtggtcggtctcgcccttcgccgctgacgaggcactgacggatccgctcgccgccgac
gcggcgggggacaccctcaagctcggcatgcacgcgcccgacagctaccgaggcgacacc
gccaaggccctcgccgacaccaagggctggctcgccgacggctggcgcgcggtgttcgtc
accgagggccacggtcccgccgcacgcacggttgaggtcctcggcggcgagggcatcccg
gcccgcctggattccgatctcggccagatcagcccctccgtggtgcacgtcgcctgtggc
tccatcgaatacggcttcgtggatccggcactccggctcgccgtgctcaccgagaccgac
ctgtccggccagcgtgccgccggtcgtgacggtgcccgcatgcccgcccgccgtcgcaag
accatcgatccgctcaccctggaaccgggcgactacatcgtccacgaacagcacggagtc
ggccgctacatcgagatggtgcagcgcaccgtccagggcgccacccgcgagtacctggtc
gtggagtacgcccccgccaagcgcggtcagcccggcgaccgcctctacatccccaccgac
cagctggagcagatcaccaagtacgtcggcggcgaggcgcccacgctgcaccgcctgggc
ggcgcggactggacgaagaccaaggcccgggcgaagaaggccgtcaaggagatcgccgcg
gacctgatcaagctctacagcgcgcgcatggccgcccccggtcacgctttcggtggtgac
accccctggcagcgcgaactggaggacgccttcccctacgcggagacccccgaccagctc
accaccatcgccgaggtcaaggaggacatggagaagacggtccccatggaccggctgatc
tgcggcgacgtcggctacggcaagaccgagatcgccgtgcgggccgccttcaaggcggta
caggacggcaagcaggtcgccgtcctcgtcccgacgaccctgctggttcagcagcacttc
ggcacgttctccgagcggtactcgcagttcccggtgaccgtgcgggcgctgtcccggttc
cagaccgacaccgaggccaaggccgttctggaaggtctgcacgacggcgcggtggacatc
gtcatcggcacccaccgcctgttctcctcggagacgaagttcaaggacctgggcctggtc
atcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctgcgc
gcgaacgtggacgtgctgaccatgtccgcgaccccgatcccgcgcaccttggagatggcg
gtcaccggcatccgcgagatgtccacgatcaccacgcccccggaggagcgccaccccgtg
ctcaccttcgtcgggccgtacgacgagaagcagatcggtgcggccatccgccgtgaactg
ctgcgggagggacaggtcttctacatccacaaccgggtcgagtccatcgaccgggccgcg
gcccggttgcgtgagatcgtccccgaggcgcgcatcgccaccgctcacggccagatgtcg
gaggcggccctggagcaggtcgtggtcgacttctgggagaagaggttcgacgtgctggtt
tcgaccacgatcgtcgagtccggcatcgacatctccaacgccaacacactgatcgtggaa
cgcggcgacaacttcggcctgtcccaactgcaccagctgcgcggcagggtcggccggggt
agggagcgggggtacgcctacttcctctaccccccggagaagcccctgacggagaccgcg
cacgagcgcctcgccaccatcgcccaacacacggagatgggcgccggcatgtacgtggcg
atgaaggacctggagatccgcggcgcgggcaacctgctcggcggcgagcagtccggacac
attgcgggcgtcggcttcgacctgtacgtccgtatggtcggtgaggcggtggcggactac
cggcgccagttggagacgggcgaggccggggcgggggtggaggagccgccgctggaggtc
aagatcgagctgcctgtcgacgcgcatgtcccgcacgactacgcgcccggcgagcggctg
cgtctacaggcgtaccgggccatcgcctccgccaactcggaggaggacgtcaaggccgta
cgcgaggaactctccgaccgctacgggaagctgcccgaaccggtggagaacctgctgctg
gtggccgggctgcggatgctcgcacgggcgtgcggtgtcagtgagatcgtccttcagggc
accaacatccgcttcgccccggtggagttgcgcgagtcccaggagctgcgggtgaagcgg
ctctacccgggcacggtcatcaagcctgccgcgcaccaggtgctggtcccgcgtccgaag
accgcaagggtgggcggcaaaccgctggtcggccgcgaactgctcgcctgggtcggcgag
ttcctcgcctcggttctggggtcgtga
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