Streptomyces pluripotens: LK06_030235
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Entry
LK06_030235 CDS
T04845
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
splu
Streptomyces pluripotens
Pathway
splu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
splu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK06_030235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
splu03021
]
LK06_030235
03019 Messenger RNA biogenesis [BR:
splu03019
]
LK06_030235
Transcription machinery [BR:
splu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LK06_030235
Messenger RNA biogenesis [BR:
splu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LK06_030235
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
DUF3086
AAA_16
Spore_III_AA
NACHT
AAA_22
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
ARP73540
UniProt:
A0A221P6G0
LinkDB
All DBs
Position
complement(6872593..6873756)
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AA seq
387 aa
AA seq
DB search
MTTTLQRPPSDQQAGTAQLVTGVLDTDARGRGHLRSLSLLPSPTDPQVPASLIRRHGLRK
GDLLVGVRGTPRALTEVTRVGRRTPADLGPRRRFCDLTPLHPHERIRLEHPAAGLAGRIT
DLFAPVGKGQRGLIVAPPRSGKTVLLQQLAAAVAGNHPECRLMVLLLDERPEEVTEMRRS
VRGAVYASTFDRPAQEHIALAELVAERAKRLVEAGEDVVILLDSLTRLCRAHNNASGTGG
RTLSGGVDAGALLGPKRFFGAARQVEEGGSLTILASVLVDTGSRADGYFFEELKSTGNME
LRLDREPAARRIFPAVNIDATGTRREEMLLTPAELTAVSGLRRALRTREGGPAALETLLE
RLRATPDNAAFLQRVRPTLPAGRRTTP
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccacactccaacgccctccctcggaccagcaggccggaaccgcccagctcgtc
accggcgtgctcgacaccgacgcacggggaagggggcacctgaggtccctgagcctcctc
ccctcccccacggacccccaggtccccgcctcgctgatccgccgacacggcctgcgcaag
ggtgacctgctcgtgggcgtccggggaaccccgcgcgccttgaccgaggtgacgcgcgtc
ggccgacgcacgcccgcggacctcggcccccgtcggcgcttttgcgacctcaccccgctc
cacccacacgagcgcatccgcctggaacaccccgccgccgggctggccggacgcatcacc
gacctgttcgcgccggtcggcaagggccagcgcggccttatcgtcgccccgcccaggagc
ggaaagacggtgctactccagcaactcgccgccgcagtggccggcaaccacccggaatgc
cgcctgatggtcctcctgctggacgagcgcccggaggaagtcaccgaaatgcgccgatcc
gtacggggcgcggtgtacgcctccactttcgaccgccccgcgcaggaacacatcgccctc
gccgaactcgtagccgaacgggcgaagcgcctggtggaggccggcgaggacgtcgtcatc
ctgctggactcactcacccggctgtgccgggcgcacaacaacgcctccggcacgggcggc
cgtaccctgagcggtggtgtcgacgcgggcgcactgctcggtcccaagcgattcttcggt
gccgcccgccaggtcgaggaaggtggttcgctcacgatcctcgccagcgtgctggtggac
accggttcccgggccgacggctacttcttcgaggaactcaagagcacgggcaacatggag
ctccgtctggaccgcgaacccgccgcccgccggatcttcccagccgtgaacatcgacgcc
accggcacccgccgcgaggaaatgctgctcactccagccgagttgacagccgtatctgga
ctgcgtcgtgccctgcgcacccgggaaggcggaccggccgccctggaaacactcctggag
cggctgcgggccaccccggacaacgccgccttcctgcagcgggtccgacccaccctgccc
gccgggcgacgaacgactccttga
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