Serratia inhibens: Q5A_001320
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Entry
Q5A_001320 CDS
T04576
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sply
Serratia inhibens
Pathway
sply03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sply00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q5A_001320 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sply03021
]
Q5A_001320 (rpoC)
03400 DNA repair and recombination proteins [BR:
sply03400
]
Q5A_001320 (rpoC)
Enzymes [BR:
sply01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q5A_001320 (rpoC)
Transcription machinery [BR:
sply03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q5A_001320 (rpoC)
DNA repair and recombination proteins [BR:
sply03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q5A_001320 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ANS40771
LinkDB
All DBs
Position
288336..292559
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERIYRAG
LASLHARVKVRITEEIKNTEGESVHQTSIIDTTVGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGITMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLHEKTCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTLKL
SNVKFVMNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGAEVNGGETVANW
DPHTMPVITEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGSTEFLEGEQAEVSRVKIANRQLAAEGKIEATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQGEVPV
VPQVSAEEATANLAELLNAGNLGGNDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcatcgccagatatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcttaaaacac
cgcggcgtgatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgccgtgag
cgcatgggccacatcgagctggcatcaccgactgcacatatctggttcctgaaatcgctg
ccttcgcgcatcggtttgctgctggatatgccgctgcgtgacatcgaacgcgtactgtac
ttcgaatcctatgtggttgttgaaggcggtatgaccaacctcgagcgtcgtcagatcctg
actgaagagcagtatctggatgcgctggaagagttcggtgacgaattcgacgccaagatg
ggtgcggaagctattcaggccctgttgaaaaacatggatctggaagcggaatgcgaacag
ctgcgtgaagagttgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gtgctgccggtactgccaccggatctgcgtccgctggttccgctggatggtggtcgtttc
gcgacttcagatctgaacgatctgtaccgccgcgtaatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagatgccctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctggccaccaccatcaaagccgccaagaaaatg
gttgagcgcgaagaagctgtcgtttgggacatcctcgacgaagttatccgcgaacacccg
gtattgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggcaaggcaatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccaaatggctgtacacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgagcggcccgaaagaagctgagcgtatttatcgcgccggt
ctggcctctctgcatgcgcgtgtcaaagtgcgtatcaccgaagagatcaaaaacaccgaa
ggcgagtctgtacaccagacttcgatcatcgacactaccgttggtcgcgccatcctgtgg
atgatcgtgccaaaaggtctgccgtactcgatcgttaaccagcctttgggcaagaaagcg
atctccaagatgctgaacacctgttaccgcatcctgggcctgaagccgaccgttatcttt
gctgaccagatcatgtacaccggttttgcctatgcagcccgttcaggtgcttcagtaggt
atcgatgacatggttatcccagccaagaaagcagagatcatcgaagaagcggaaaccgaa
gttgccgagatccaggagcagttccagtctggtctggtaaccgccggcgaacgttacaac
aaagtgatcgatatctgggctgcggcaaacgaacgtgttgctaaagcgatgatggaaaac
ctgtcggttgaagacgtggttaaccgtgacggcgttgtggaacaacaagtttccttcaac
agcatctttatgatggccgactccggtgcacgtggttccgccgctcagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccggacggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccactcacggtgctcgt
aaaggtttggcggataccgcactgaaaacggctaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatctggtggtgaccgaagacgactgtggcactcacaacggcatc
acgatgactccggttatcgaaggtggcgacgttaaagagccactgcgtgaacgtgttctg
ggtcgtgtgactgcagaagatgtcatcaagccgggtacggcggacattctggttccacgc
aacacgctgttgcatgagaagacctgtgacctgttggaagagaattctgtcgacagcgtt
aaagtccgctctgtagttagctgtgaaaccgactttggtgtgtgtgcaaactgctatggt
cgcgacctggcacgtggtcacatcatcaacaaaggcgaagctatcggcgttatcgcggca
cagtcaatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaagggtacgctgaagctg
agcaatgtgaagttcgttatgaacgccgcaggcaagctggtgattacctctcgtaacacc
gagctgaagctgatcgacgaattcggtcgtaccaaagaaagctacaaagtgccttacggt
gccgtgatgggcaaaggtgacggtgcagaagttaacggcggcgaaaccgttgctaactgg
gatccgcacaccatgccagttatcaccgaagtgagtggtttcatccgcttcgctgatatg
gttgacggccagaccattacccgccagaccgacgaactgaccggtttgtcttctctggtc
gtactggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgctaaaggcgacgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgtgcagctggaagacggcattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccacgc
gttgcggatctgttcgaagcacgtcgtccgaaagaaccggctatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaaacgtcgcctggtaatctctccgctg
gacggcagcgacgcttacgaagagatgattccgaaatggcgtcagctcaacgtgtttgaa
ggcgaaattgtggaacgtggcgacgttgtttctgacggcccagagtctccgcacgacatt
ctgcgtctgcgtggtgtgcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgcaaaggcaccatcgttagcgctggtagcaccgagttcctggaaggcgagcaggct
gaagtgtctcgcgttaagattgccaaccgtcagcttgctgctgaaggtaaaatcgaggca
accttctcacgcgatctgctgggtatcaccaaggcttccttggcgaccgagtccttcatc
tccgcagcatcgttccaggaaacgacgcgtgttctgaccgaagcggctgttgccggtaag
cgtgatgaactgcgcggcctgaaagagaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcaccaggatcgtatgcgccgtaaagcacagggcgaagtgccggtt
gttccgcaggtcagcgcggaagaagcgacagctaacctggctgaattgctgaatgcaggt
aacctgggcggtaacgacgagtaa
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