Serratia inhibens: Q5A_009405
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Entry
Q5A_009405 CDS
T04576
Symbol
rne_2
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sply
Serratia inhibens
Pathway
sply03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sply00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q5A_009405 (rne_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sply03019
]
Q5A_009405 (rne_2)
03009 Ribosome biogenesis [BR:
sply03009
]
Q5A_009405 (rne_2)
Enzymes [BR:
sply01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Q5A_009405 (rne_2)
Messenger RNA biogenesis [BR:
sply03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q5A_009405 (rne_2)
Ribosome biogenesis [BR:
sply03009
]
Prokaryotic type
rRNA processing factors
Q5A_009405 (rne_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ANS42343
UniProt:
A0A1B1KPI6
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All DBs
Position
complement(1994937..1998296)
Genome browser
AA seq
1119 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIKKAAEGRAAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAIIVPNDQMQ
TPHYSVLRVRKGEETATLSYLLPKLHEEEMAQPLEDAPMERKRPEQPALASFSLAADAPP
PAEEPVATQAATAAVATKPSAPAAAKPGLLGRLFGGLKALFASEEPPVVEAKPVVDAPKA
DGNGENRRQDRRGQRRQGTGRKERGERGERGERGERSDRPERGERKERGEGRDNRERDNR
EPRENREPRDNRGEGRETREARDEQRRNNRRNAPQVAPVVEEPQSEEAAKAQREEQQQRR
DQRAERQRRRQEEKRQAQQEVAALESVNTSTNVISDEDLEERQQQNMQRRQRRPLSQKVR
VLSAEEELHRAAEELLAPKAPVVKTQDVKPALEEDSVKLLPETLDAPAEDDVQADNRNGE
NGMPRRSRRSPRHLRVSGQRRRRYRDERYPAQSPMPLAGAFASPEMASGKVWVSYPVTQA
AQVIEEVEVQTETAEIAADNVMAQETVSVATPIIAEAAAQTIVPVETPEVVVAEEAQPEV
ETVEPAIAAQSVETAVVPQTEAPVIEETTLVEETTAVEAAPVVEATSVAEETAAVVEPVA
EPAPVIVEAAPVQEAAAPVVVAEKPPVVQQPAPVQDTLYKHIATAPMTKAPAPAYEPEEQ
KRSDWQRPSFSFEGKGSAGGHAAVNQATAPATKPQPVNE
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatttggacattgaaagcccaggtcatgaacagaaaaaagcgaat
atttacaaaggcaaaatcactcgtattgaaccaagtcttgaagcagcgttcgttgattac
ggcgcagaacgacatggtttcctccctcttaaagaaattgcccgcgaatacttcccaagt
aactactcttcccatggccgcccgaacatcaaagatgtgctgcgcgaaggccaggaagtt
atcgttcagattgataaagaagaacgtggtaacaaaggcgcagccctgaccacttttatc
agcctggccggcagttatctggtgttgatgccgaacaacccgcgtgccggtggcatttcc
cgccgcatcgagggtgacgaccgcaccgaattgaaagaagcgctttcctccctgcaattg
ccggacggtatgggcctgattgttcgcaccgctggcgttggtaaatctgccgatgcgctg
cagtgggacctgtctttccgtctgaagcattgggaagccatcaagaaagccgccgaaggc
cgcgctgctccgttcctgatccatcaggaaagcaacgtgatcgtacgcgcattccgcgac
tacctgcgcccggatatcggtgaaatcctgatcgacaaccctaaagttctcgatttggcc
aaagagcacatcgctgcactgggccgcccggatttcagcagcaaaatcaaactgtacagc
ggtgaaatccctctgttcagccattaccaaatcgaatctcagatcgaatccgccttccag
cgtgaagtgcgcctgccttccggtggctcgatcgttatcgacactaccgaagccttgacc
gccatcgacatcaactccgcgcgagcaacccgcggcggcgatatcgaagaaaccgcgttc
aacaccaacctggaagcggcggacgaaatcgctcgccaactgcgtttgcgtgaccttggc
ggcctgattgttatcgacttcatcgatatgaccccggtacgccaccaacgcgaagtagaa
aaccgcctgcgtgacgcagtgcgccaggaccgtgcgcgtatccagatcggccgcatttcc
cgctttggcctgcttgagatgtcgcgccagcgcctcagcccgtcactgggtgaatccagc
catcacgtctgccctcgctgtaatggcaccggcaccatccgtgataacgaatcgctggca
ctttccattctgcgcctgatcgaagaagaagcactgaaggaaaataccaaagaagttcac
gctatcgtgccagttcaagtggcctcttacctactgaacgaaaaacgtgagtcggtgagc
gcgatcgaaaaacgtcagggtggcgtgaaagcgatcatcgtgccgaacgatcagatgcaa
accccgcactactctgtgctgcgtgtgcgcaaaggcgaagaaacagcaaccctgagttac
ctgttgccgaaactgcacgaagaagagatggcccagccactggaagatgcgccgatggag
cgcaaacgtccggaacaaccggctctggcctcgttctctttggctgctgacgcaccaccg
ccagctgaagaacctgtggcaacccaagctgcaacagccgctgtagcgaccaaaccaagc
gcaccagccgctgccaaaccgggcctgttgggccgcctgttcggtggattgaaagcgctg
ttcgccagtgaagaaccacctgttgttgaagccaaacctgtcgttgatgcacctaaggcc
gatggcaacggtgaaaaccgccgccaggatcgccgtggtcaacgccgtcagggtacaggc
cgtaaagaacgcggggagcgtggggagcgtggggagcgaggtgagcgtagcgatcgtcct
gaacgcggcgaacgtaaagagcgcggcgaaggccgtgataatcgcgagcgcgataaccgt
gaaccacgtgaaaatcgtgagccgcgtgacaaccgtggtgaaggccgtgaaacgcgtgaa
gcgcgcgatgaacaacgccgtaacaatcgccgcaatgcgccgcaggttgcaccggttgtc
gaggagccacaatctgaagaggctgccaaggcacagcgtgaagagcagcaacagcgccgt
gaccagcgtgcagaacgccaacgccgtcgtcaggaagaaaaacgtcaagctcagcaggaa
gtggctgcactggaaagtgtaaacaccagcaccaacgttatcagcgatgaagatctggaa
gaacgccagcagcagaacatgcagcgtcgccagcgtcgtcctctgtcgcagaaagttcgc
gttctgtccgcggaagaagaactgcatcgcgcagcggaagaactgctggcacctaaagcg
ccggtcgtgaaaacccaagacgtgaagccggctctggaagaagacagcgttaaactgctg
ccagaaacccttgatgcaccagctgaagatgatgttcaggccgacaaccgtaacggcgaa
aatggcatgccacgccgttcacgccgctcaccacgtcatctgcgcgtgagcggtcagcgc
cgtcgccgttaccgtgatgagcgttaccctgcccagtcaccaatgccgctggccggggct
ttcgcctcgccggaaatggcgtctggcaaggtctgggtcagttaccctgtaacacaagct
gcacaagtgattgaagaagttgaagttcagactgaaactgccgaaatcgctgccgacaac
gtgatggcgcaagaaaccgtcagcgtagccactccgataatcgctgaggctgccgcacaa
accatcgtgccggtagaaacccctgaagttgtcgttgcagaggaagcccaaccggaagtt
gaaactgttgagccggccattgcagctcaatctgtggaaacggctgtggtaccgcagacc
gaagcgccagtaattgaagaaactaccctggttgaagagactactgcagttgaagcagcc
ccggtggttgaagcaacctctgttgcggaagagactgccgctgttgttgagcctgtcgca
gaaccagcgccggtcatcgttgaggccgcacctgttcaggaagcggccgctccggtggtg
gttgcagaaaaaccgccggttgttcagcagccagcgccggtacaggatacgctctataag
catatcgccacggcaccgatgaccaaggcccctgcgccggcttacgagccggaagaacaa
aaacgcagtgattggcaacgcccttccttcagtttcgaaggtaaaggctctgcgggtggc
catgctgcggtaaatcaagccacagcgccggcaaccaaaccgcagccggttaacgaataa
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