Serratia inhibens: Q5A_013590
Help
Entry
Q5A_013590 CDS
T04576
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sply
Serratia inhibens
Brite
KEGG Orthology (KO) [BR:
sply00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sply03019
]
Q5A_013590
Enzymes [BR:
sply01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Q5A_013590
Messenger RNA biogenesis [BR:
sply03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Q5A_013590
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
NACHT
nSTAND3
T2SSE
nSTAND_NTPase5
PhoH
ResIII
SLFN-g3_helicase
AAA_16
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ANS43171
LinkDB
All DBs
Position
complement(2876827..2880714)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLAASSAQLGELMLRDQQRLQRRLQGARKIKNPDAQLAVAAEVESDIAAALQKVQAR
AASCPKITYPENLPVSQKKQDILNAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGL
IGHTQPRRLAARTVANRIADELETPLGGSVGYKVRFNDQVSENTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVEVRYRPVVDDAEDTDRDQLQAIFDAVDELGHEGPGDILIFMSGEREIR
DTADALNRLDLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNILDGVRLLEELGAIKTAENGHYQ
LTPQGRQLAQLPIDPRLARMVLEAQKSGSVREVMIITAALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAYVNLWDYLKEQQKEHSSSQFRRLCRNDFLNYLRVREWQDIYTQLRQVV
KELGLPVNSEPSDYRSVHTALLTGLLSHIGQKDADKQEFTGARNARFSIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLVKHSYSEPHWSKSQGAVMANEKVTLF
GLPIVAARPVNYSTIDPLLCRELFIRHALVEGDWQTRHAFFSANLKLLAEVEELEHKSRR
RDILVDDETLFSFYDQRIPSDVVSGRHFDNWWKTAGKQKPDLLSFEKEMLIKDGANKVSA
LDYPNAWHQGNLKLRLTYQFEPGTDADGVTVHIPLPILNQIEDQGFEWQIPGIRRELVIA
LIKSLPKPVRRNFVPAPNYAEAFLGRVTALELPLLDALERELRRMTGVTVSREDWHWDQV
PDHLKMTFRVVGENHKTLLEGKDLTALKLQLKDKVQETLSAVADDGLEQSNLHIWSFGKL
PEFYEQKRGGYSMKAYPALVDEKDSVAIRLFDSEQEQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCISCGIDKLIAEHGGPVWQEDNFARLQELVRGEL
NETVVGVARQVEQILTTVFNINKRLKGRVDMSLALALSDIKNQLGGLIYRGFVTNNGWKR
LPDTLRYLQAIERRLEKLAIDPHRDRAQMLRVDQVQQAWQQWLNKLPPKRRQDDEVKEVR
WMIEELRVSLFAQQLGTPYPISDKRIMQTIEQLSA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatctccgctcgcggcatcctctgcccaactgggcgaactgatgctccgtgatcaa
caacgcctgcaacgtcggttgcagggcgcacgaaaaatcaaaaatcccgatgctcagttg
gcggtcgccgctgaagtagaaagtgacattgcggcggcgttgcagaaagtgcaggcgcgc
gctgcctcttgcccgaaaatcacctatccggaaaacctgccggtcagccagaaaaagcag
gatatcctgaatgcgattcgtgaccatcaggtcgtgattgtcgccggtgaaaccggttcg
ggaaaaaccacccagttgccgaagatctgcctggagctggggcgtggggtgaaggggctg
atcggccatacccagccacggcgcctggcggcacgcaccgtagcaaaccgcattgccgat
gaactggaaacgccgctcggcggcagcgtcggttataaggtgcgctttaacgatcaggtc
agtgaaaatacgctggtcaagctgatgaccgacggtattctgctggcggaaatccagcag
gatcggctgttgatgcaatacgacacgctgattatcgatgaagcgcacgaacgcagcctg
aatatcgactttatcctcgggtatctgcgcgaactgttgccgaagcgccccgatctgaaa
gtcatcatcacttcggcgaccatagatccgcagcggttttcgcgccatttcaataacgcg
ccgattatcgaagtttccggccgcacttatccggtcgaggtgcgttatcgcccggtggtg
gacgacgccgaggataccgaccgcgatcaactgcaggcgattttcgacgcggtagatgaa
ctcggccatgaagggccgggggatatcctgatctttatgagcggcgagcgtgaaattcgc
gacaccgccgacgccttgaaccgtcttgatttaccgcataccgaagtattgccgctgtat
gcgcggctatcgaacagcgaacaaaaccgggtgttccagtcgcatcatggccgccgcatt
gtgctggcgaccaacgtggcggaaacctcgctgacggtgccgggcatcaaatatgtcatc
gatccgggcaccgcgcgcatcagccgctacagtttccgtaccaaggtccagcgcctgccg
atcgagccggtatcacaggcctccgccaaccagcgtaaaggccgctgtggccgcgtgtcg
gacggtatctgtatccgcctgtactccgaacaggatttcctgtcgcggccggagtttacc
gatccggagatcctgcgcaccaacctggcgtcggttatcttgcagatgacgtcgctcggg
ctgggcgatatcgccgcattcccgtttgtcgaagcgccggacaagcgcaatattctggac
ggcgtgcgcctgttggaagagttgggtgcgattaaaacggccgaaaatggccattaccaa
ctcaccccgcagggccgccaactggcgcagttgcctatcgatccgcgcctggcgcgcatg
gtactggaagcgcaaaagagcggcagcgtgcgtgaggtgatgatcatcaccgccgcgttg
tcgatccaggatccgcgagagcggccgatggacaaacagcaggcgtcggacgagaaacac
cgccgcttcgccgacaaagactcggacttcctggcctacgttaacttgtgggactacctg
aaagagcagcaaaaagagcactcctctagccagttccgtcggctgtgccgcaatgatttc
cttaactacctgcgggtgcgcgaatggcaggatatctacacccaactgcgccaggtggtg
aaagaactggggctgccggttaacagcgagccttccgattaccgcagcgtgcataccgcg
ttgctcaccgggctgctgtcgcacatcggccagaaggatgccgacaagcaggagtttacc
ggtgcccgcaacgcccggttctcgatcttccccggctccggcctgttcaagaagccgccg
aagtggacgatggtggccgaactggtggaaaccagccgcctgtggggccgcatcgccgca
cgcatcgagcctgagtggattgaaccgctggcccagcacctggtgaaacacagttatagc
gaaccgcactggtcgaaatcccagggcgcggtgatggccaatgaaaaagtgacactgttt
gggttgccgattgtcgctgcgcggccagtcaattacagcactattgatccgctgctgtgc
cgtgagctgtttatccgccatgcgttggtggaaggcgactggcagacgcggcatgcattc
ttcagcgccaacctgaagctgctcgccgaagtggaagagctggagcataaatcgcgtcgc
cgtgacattttggtggatgacgaaaccctgttcagtttctacgaccagcgaataccgagc
gatgtggtgtccgggcgtcattttgacaactggtggaaaaccgccggtaaacaaaagccg
gatctgctcagctttgaaaaagagatgctgatcaaggacggcgccaacaaagtcagcgcg
ctggactacccgaatgcctggcaccagggcaatctcaagctgcgcctgacttatcagttc
gaaccgggcaccgacgccgatggcgtcacggtgcacattccgctgcctattctcaaccag
attgaagatcagggctttgaatggcagatcccgggtattcgccgtgagctggtgattgcg
ctgatcaagtcgctgccgaagccggttcgccgtaactttgtcccggcaccgaactacgcc
gaggctttcctcgggagggtgaccgcgctggagctgccgctgctggatgcgctggagcgc
gaactgcggcgcatgacaggggtgacagtgtcacgtgaagactggcattgggatcaggtg
cccgatcatcttaaaatgactttccgggtcgtcggcgaaaatcacaaaaccttgctcgaa
ggtaaggatctgacggcgctgaagctgcaactgaaggataaagtgcaggagacgctgtcg
gcggtggcggatgacgggctggaacaaagcaatttgcatatctggagcttcggcaaattg
cccgagttttatgagcagaaacgcggcggctactcgatgaaagcctacccggcgctggtg
gatgaaaaagacagcgtggcgatccgcctgttcgacagcgagcaggagcagcaacaggcg
atgtggcaaggcacgcgccgcctgttgttgctgaatattccttcaccgatcaaatatctg
catgaaaagttgcccaacaaagccaagctcgggctgtattttaacccttacggcaaggtg
ttggatttgatcgacgactgcatctcgtgcggtatcgacaagctgattgccgaacatggc
gggccggtatggcaggaagataacttcgcgcgcctgcaggagttggtgcgcggcgagttg
aatgaaacggtggtgggggtggccaggcaagtcgagcaaatcctgaccacggtgttcaac
atcaacaagcggttgaaaggccgggtggacatgtcgttggcgctggcgctgtcggatatc
aaaaaccagcttggcggcctgatttatcgtggattcgtcaccaacaacggctggaagcgc
ctgccggatacgctgcgttatttgcaggcgattgaacgtcggctggagaagctggcgatt
gatccgcaccgcgaccgcgcgcagatgctgcgggtggatcaggtgcagcaggcatggcaa
cagtggctgaacaagctgccgccgaaacgccggcaggatgacgaagtgaaagaagtacgc
tggatgatcgaagagctgcgcgtcagcctgttcgcccagcaactcggtacgccttacccg
atttcggacaaacgcatcatgcagactatcgagcagctttcagcttaa
DBGET
integrated database retrieval system
