Serratia inhibens: Q5A_014405
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Entry
Q5A_014405 CDS
T04576
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sply
Serratia inhibens
Brite
KEGG Orthology (KO) [BR:
sply00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sply03016
]
Q5A_014405 (rnd)
Enzymes [BR:
sply01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Q5A_014405 (rnd)
Transfer RNA biogenesis [BR:
sply03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Q5A_014405 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ANS43332
LinkDB
All DBs
Position
complement(3048157..3049329)
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AA seq
390 aa
AA seq
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MPALLCLNHESDQENDVLNYQLITTDAGLQQVCEQARNHAQIALDTEFVRTRTYYPQLGL
IQLYDGEQLSLIDPLPIKQWQPFIDLLSDTQIVKFLHAGSEDLEVFLNAFKTLPTPMVDT
QILAAFTGRPLSCGFATLVTEYMQVDLDKSESRTDWLARPLTEKQCVYAAADVFYLLPMA
KQLVQETEDAGWTAAAANECLLLCQRRSESLAPELAYREITNAWQLRPRQLGCLQKLAEW
RLRQARERDLAVNFVVREENLWQVARYMPTSLGELDSLGLSGPEIRYHGKTLLALVAEAS
ELDEAALPEPLSNLIDQPGYKKVFKDIKAAIVIVSEQSGLSSELLASRRQINQLLNWHWK
LKSGDSLPELVSGWRGDLLASPLQDILKNY
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgttgttgtgtttgaatcatgaaagcgaccaagagaatgacgttttgaactat
cagttgatcactaccgatgccggattgcagcaggtctgcgagcaggcgagaaaccatgcc
cagattgcgttggacaccgaatttgtcagaacgcgcacctactatccgcagttaggcctg
attcagttatacgacggtgaacaactctccctgatcgatcccttgccgatcaagcaatgg
cagccgtttatcgatctgctgagcgatacccaaattgtgaaattcctgcacgccggcagt
gaagacctcgaggtgttcctgaatgcgttcaaaacgctgccgaccccgatggtcgacacc
cagatactggcagccttcaccggccgacctttgtcttgtggttttgcgaccctggtgacg
gagtatatgcaggtagatctggataaaagcgaatcccgcaccgattggctggcacgcccg
ctgacggaaaaacagtgcgtatacgccgctgccgatgtgttctacctgttgccgatggcc
aagcaactggtgcaggaaaccgaagacgccggttggactgccgccgccgccaatgagtgt
ctgctgctgtgtcaacgccgcagcgagtcgctggcgccggaattggcctaccgtgaaatc
accaacgcctggcagttgcgtccgcgccaactgggctgtttgcagaagctggcggaatgg
cggctgcgccaggcgcgtgagcgtgatttggcggtcaattttgtggtacgcgaggaaaat
ctctggcaggtggcgcgctatatgccaacttcgctgggggaattggattcgcttggcctg
agcggcccggaaattcgttatcacggtaagacgttgctggcgttggtggccgaggccagc
gagctggatgaagctgcactgccggagccgttgtccaacctgatagaccaaccgggttat
aagaaagtgttcaaggatatcaaagcggcgatcgttattgtcagtgaacaaagcgggtta
agcagcgaattgctggcatcgcgcaggcagattaaccaactgctgaactggcactggaaa
ttgaaaagcggcgatagcctgccggaattagtcagcggttggcgcggtgatttattagcg
tcgccacttcaggacattctgaaaaattattaa
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