Serratia inhibens: Q5A_019925
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Entry
Q5A_019925 CDS
T04576
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sply
Serratia inhibens
Pathway
sply03030
DNA replication
sply03430
Mismatch repair
sply03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sply00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q5A_019925 (dnaE)
03430 Mismatch repair
Q5A_019925 (dnaE)
03440 Homologous recombination
Q5A_019925 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sply03032
]
Q5A_019925 (dnaE)
03400 DNA repair and recombination proteins [BR:
sply03400
]
Q5A_019925 (dnaE)
Enzymes [BR:
sply01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Q5A_019925 (dnaE)
DNA replication proteins [BR:
sply03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Q5A_019925 (dnaE)
DNA repair and recombination proteins [BR:
sply03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Q5A_019925 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ANS44411
LinkDB
All DBs
Position
complement(4223682..4227170)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSEVLGDELAQLTVLAANNEGYQNLTLLISRAYQRGYGAAGPIIDRDW
LIEHREGLILLSGARQGDVGKFLLRGNQQQVDQCLDFYQQYFPDSYYLELIRTGRPDEEN
YLHAVVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSTQQYM
RNEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDMTTEDFLVLKSKEGL
EERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKTGLEPIDIAAIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVNDEGEIVYGIGAIKG
VGEGPIEAILEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDRLGPHRAAL
MSSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANVPRWQEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIASRVMVTKRGNRIGICT
LDDRSGRLEVMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTARELMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVELEFD
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcacctgcgcgttcatagtgactactccatgattgatgga
ttggccaagatcggaccgttggtgaaaagagccgccgcgttagccatgcctgctttggca
attaccgatttcaccaacctgtgtggtttggtgaagttctatggcagcgcgcacggcgcc
gggatcaaaccgatcatcggcgcggactttcatgtgcaaagcgaagtgttgggcgatgaa
ctggcgcagctcaccgtactggccgccaacaatgaaggttatcaaaacctgacgctgctg
atttcccgcgcttaccagcgaggttacggcgccgccggccccattattgaccgtgactgg
ctgatcgaacaccgtgaagggttaatcctgctttctggtgcccgtcagggggatgtcggc
aagtttttgctgcgcggcaaccagcaacaggtagatcagtgcctggacttctatcagcaa
tatttcccggacagctattatctcgaactgatccgcacaggccggccggacgaagaaaac
tacctgcatgcagtcgtagcgctggccactgaacgtgggctgccggtggtggccaccaac
gacgtgcgttttctggtagaggacgattttgacgcccatgagatccgcgtcgcgatccat
gacggtttcacgcttgacgatcccaaacgcccgcgcaactacagcactcagcaatacatg
cgcaacgaagacgagatgtgcgagctgtttgccgacatccccgaagcgttgctcaacagc
gtcgaaatcgccaagcgctgcaatgtcaccatccgcctcggcgaatacttcctgccgcaa
ttcccgaccggtgatatgaccaccgaggatttcctggtgctcaaatcgaaggaagggctg
gaagagcgcctggaattcctgttcccggatcctgaggttcgcgcacagcgtcgtcctgaa
tatgacgaacgtctggatattgagctgaaagtgatcaaccagatgggcttcccgggctac
ttcctgatcgtaatggagttcatccagtggtcgaaggataacgacgtacctgttggtccg
ggacgtggttccggtgccggttcgctggtagcttatgcgctgaaaatcaccgacctcgat
ccgctggaatttgacttgctgttcgaacgtttcctcaacccggaacgtgtttcgatgccc
gacttcgacgtcgacttttgcatggaaaaacgcgatctggtgattgagcacgtggcggag
atgtatggccgcgaggcggtatcgcagatcatcaccttcggcaccatggcggcgaaagcg
gttatccgcgacgtgggccgcgtgctgggccacccgtatggtttcgtcgatcgtatctcc
aagctggtgccgcccgatccgggcatgaccctggagaaggcctttgccgccgaaccgcaa
ctgccggaaatttacgaggctgacgaagaagtcaaagcgctgatcgacatggcgcgcaag
ctggaaggggtgacgcgtaacgccggtaagcacgccggtggcgtggttatcgcacccacc
aagatcactgacttcgcgccgttgtattgcgacgcggaaggaaatcacccggtcacccag
tttgacaagaatgatgtggaatacgccgggctggtgaagttcgacttccttggtttgcgt
accctgaccatcatcgactgggcgttggggatgatcaatgcccggcgagcgaaaaccggg
ttggaacctattgatatcgcggctattccgctcgaagacaaaaaaagcttcgatatgctg
cagcgctcggaaaccactgcggtattccagctcgaatcacgcggtatgaaggatctgatc
aagcgtctgaagcctgactgtttcgaagatatgatcgcgctggtggcgctgttccgcccg
ggaccgttgcagtccggcatggtagataacttcatcgaccgcaaacacggccgtgaagag
atttcttacccggacatccaatggcagcatgagtcgctgaaaccggtgctggagccgacg
tatggcatcatcctgtaccaggaacaggtcatgcagattgcccaggtgctggccggctat
acgctgggcggggcggacatgctgcgtcgtgcgatgggtaaaaagaacccggttgagatg
gccaagcagcgcggcggtttcgaggatggggcgaaatcgcgcggtatcgacggtgaactg
tcggtaaaaatcttcgatctggttgagaaattcgccggttacggttttaacaaatcgcac
tccgccgcctatgcgttggtgtcatatcagacgctgtggctcaaagctcactatccggcc
gagtttatggcagcggtaatgaccgccgatatggacaacaccgacaaggtggtggggctg
gtggatgaatgctggcgcatgggcctgaaaatcctgccgccggacatcaacagcggccag
taccacttccacgttaacgatgaaggcgagatcgtttatggcatcggcgccatcaaaggc
gttggcgaagggccgattgaagccattctcgaagcgcgtaacagcggggagcagggctac
tttaaagacctgttcgatctgtgcgcgcgctcagatatcaaaaaactgaaccgccgcatt
ctggaaaaactgatcatgtccggggcgttcgatcgccttgggccgcaccgtgccgcattg
atgagctcactgggcgacgcgttgaaagcggccgatcagcatgcgaaagccgaagcgatc
ggccaggtggacatgtttggcgttctggcggaagcgccggagcaggtggagcaatcctac
gccaacgtgccgcgctggcaggagcaggtggtgctggatggtgaacgggaaacgctgggg
ctgtacctgaccggccacccgatcacccagtacctgaaggagatcgaacgttacgccggt
ggccagcgtttgaaagatatgcacccgacggatcggggcaaaatgacgaccgctgttggg
ctggtgatcgcctcgcgggttatggtcaccaagcgcggtaaccgcatcggtatttgtacg
ctggatgaccgttcaggtcgtctggaggtgatgttattcaccgatgcgttagaaaaatac
cagcatttgttggaaaaagaccgtatcctgatcgccagtggacaggtcagctttgatgac
tttagcggtgggcttaaaatgacggcccgcgaactaatggacatcagtgaagcccgtgaa
aaatacgctcgtgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttg
aaccgtctccgtcagtcgttggaaccccatcgctcggggacgattccagtgcatctttac
tatcaacgggaagatgcgcgggccaagctgcgttttggcgcaacctggcgcgtgacgccc
accgaccgcttgttgatagatttgcggactttggtaggtaatgagcaggtggaactggaa
tttgactaa
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