Serratia inhibens: Q5A_023005
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Entry
Q5A_023005 CDS
T04576
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
sply
Serratia inhibens
Brite
KEGG Orthology (KO) [BR:
sply00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sply03019
]
Q5A_023005 (csrD)
Messenger RNA biogenesis [BR:
sply03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Q5A_023005 (csrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
RH1
Hrs_helical
Motif
Other DBs
NCBI-ProteinID:
ANS45015
LinkDB
All DBs
Position
complement(4928737..4930668)
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AA seq
643 aa
AA seq
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MRFTTKLSTLITLLVALAMFLMLMGCSYSFFYVTQDRLERRFDSLVTSLDQSMLHGAPDE
QQQWLPLVMRPLGIVAVSVDSGRTNLLTYKLPTLKLPWDSLNGYRQVSRPLLQHPGSSLN
ITYVDPFASDVRSLQSTGVVTLSIVVMMVILLFSLRWLREQAEGEDRLERRARRILNGER
ESVMQGDVREWPANVSGALDRLLADLAEAREERSRVDTLIRAFAAQDAKTGLNNRLFFDN
QLATQLEEEGSHGIVMMVRLPDFDTLRETHGNNAVQELMYSLVNLLSTFVMRYPAALLAR
YFHSDFTVLLPHRTLKEADGIAAQLVNAIDSLPSTALIDREAFLHIGIVAYRSGQTPEQV
IDYAEQATRHATLQGGNGWYVYDSQVPEKGRGSVKWRTLLEQVLVRGGPRLYQKPAVTVE
GDVHHREIMSRIYDGTQELLPSEYMPLVQQLGLAESYDRQHISRILPLLALWPEETLAFT
LCVDSLLQRSFQRWLRDTLLQCEKSHRRRILIELAEADVCQHIDRLRPVLRLLSGLGCRL
AVSQAGLTVVSASYIKSLPVEIVKLHPGLVRGIDKRDENQLFVQSLTGACEGTSARVFAA
SVRTNNEWQTLKERGILGGQGDFFAPPEPIDVGRKKYSRRYRV
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttaccacgaagctgtctacgttgatcaccctgctggttgctctggcgatgttt
ttgatgctgatggggtgttcatacagttttttctacgttactcaggatcgcctggagcgc
cgcttcgattcgctggtgacgtcgctcgatcagtcaatgctgcatggcgccccggacgaa
cagcaacaatggttgccgctggtgatgcgtccgctcggtatcgtggccgtcagcgtcgat
agcggccgcaccaatctcctcacctataaactgccgactttgaagctgccctgggattcg
ctgaacggctaccgtcaggtctcccgacctctgctgcagcacccgggcagttcgcttaac
atcacctatgtcgatcccttcgccagcgatgtgcgctcgctgcaatccaccggcgtcgtc
acgctgtcgatcgtcgtgatgatggtgattttgctgttcagcctgcgctggctgcgtgag
caggccgagggagaggatcggctggaacgccgtgcgcggcgcattcttaacggcgaacga
gagagtgtgatgcagggcgatgtgcgcgaatggccggcgaacgtcagcggtgcgcttgat
cgcctgctggcggatctggcggaagcgcgtgaagagcgtagccgggtcgatacgctgatc
cgcgcctttgccgcgcaggacgccaaaaccgggctgaacaaccgactgttttttgataac
caactggcgactcagttggaggaagaaggctcgcacggcattgtcatgatggtgcggtta
cccgacttcgacacgctgcgggaaacccacggcaacaacgcggtacaggaactgatgtac
tcgctggtcaatctgctgtcgactttcgtgatgcgctatccggcagcgctgctggcgcgt
tatttccacagcgacttcaccgtattgttgccgcaccgtacgctgaaagaggcggacggc
atcgccgcgcagctggtgaatgccattgactcactcccttcaacggcgctaatcgatcgc
gaggcgttcttgcatatcggcatcgtggcgtatcgcagcggacagaccccggaacaggtg
attgattacgcggagcaggcaacgcgacacgccacgctacagggaggaaatggctggtac
gtatatgacagccaggtgcccgaaaaggggcgcggcagcgtcaaatggcgcaccctgctg
gagcaggtgctggtgcggggcggtccgcgcctgtatcaaaaaccggcggtaacggtggag
ggggatgttcatcaccgtgaaatcatgagccggatttatgatggaacccaagagctgttg
ccatctgaatatatgccgctggtgcagcagttggggctggctgaaagttacgatcgccag
catatcagccgtatccttcctctgctggcgctgtggccggaagagacgctggcatttacg
ctgtgcgtagattcattattgcagcgcagtttccagcgctggttgcgcgataccctgctc
cagtgtgaaaaaagtcaccgtcggcgaattctgattgaacttgcagaggcagatgtgtgt
caacatatcgaccgtttgcgcccggtgctgagattgctttcaggattgggttgccgtctt
gccgtttctcaggcgggattaaccgtggtcagtgcctcctatatcaagtccttaccggtg
gagatcgtcaaactccaccctggtttagtgcgtgggattgataagcgtgatgaaaatcag
ctgttcgtgcagagcctgactggcgcctgcgaaggcaccagcgccagggtgtttgccgcc
agcgtgcggacgaacaacgaatggcagacgctgaaagaacgcgggatccttggcgggcag
ggcgacttttttgcgccgccggagccgatagacgtggggcgtaaaaaatattcgcgccgt
tatcgcgtttaa
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