Sphingomonas sp. M1-B02: OKW87_02960
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Entry
OKW87_02960 CDS
T11063
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OKW87_02960 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spmb03021
]
OKW87_02960 (rpoD)
Transcription machinery [BR:
spmb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OKW87_02960 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
UZK66815
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All DBs
Position
complement(598655..600697)
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AA seq
680 aa
AA seq
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MAKANGGGNGGGDDTTIDTGDAPLIDLNEGTLKKLVARAKKRGYITVDQLNEMLPQDQMS
SEQIEDVMSALNDMGINVVENEEGGEDAEAEDDTPDEVDAEAKDDEPAFEIAKKKETVDR
TDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIGWSNALNE
GTMQLREILDLDAMLSKGPSPEQVEGAEEDDNGEISEKTAGATFKEEAEPEEAPADDEDE
DSMTERRTPRPSDDEEEDNTLSLAQMEEQLKPQALERFANITSIYKKFSKIQLARLDAMS
AGGELASAQERSYHKLREELTAEVESVQFHNAKIEYLVDQLYSFNRRLTALGGQMLRLAE
RHKVPRKDFLDRYVDHEMDESFIATVEKLDKKWKAFAENEAPAVDRIRIEISEISQATGM
SLTEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHE
QGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVD
AAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAK
ALRKLKHPSRSRKMRSFLDQ
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggcgaacggcggcggcaatggcggcggcgacgatacgacgatcgacaccggc
gatgcgcccctcatcgatctcaacgaaggcacgctgaagaagcttgtcgcccgcgccaag
aagcgcggttacatcaccgtcgaccagctcaacgagatgctgccgcaggaccagatgtcc
tccgagcagatcgaggacgtgatgtctgcgctcaacgacatgggcatcaacgtcgtcgag
aatgaggaaggcggcgaggacgccgaagccgaggacgacacccctgacgaggtggatgcc
gaggccaaggacgacgagcccgccttcgagatcgccaagaagaaagagacggtcgatcgc
accgacgatcccgtccgcatgtatctgcgcgagatgggcgcggtcgagctgctcagccgc
gagggcgaaatcgccatcgccaagcggatcgaggccggccgcgacacgatgattctcggt
ctgtgcgaatcgccgatcaccttcaacgcgatcatcggctggtccaacgcgctcaacgaa
ggcacgatgcagctgcgcgagatcctcgatctcgatgcgatgctctccaagggtccctcg
cccgagcaggtcgagggcgccgaggaagacgataatggcgagatcagcgaaaagaccgct
ggcgccacgttcaaggaagaagccgagcccgaagaggcgcccgccgacgacgaggacgag
gattcgatgaccgagcggcgcaccccgcgcccctcggacgacgaggaagaggataatacc
ctcagcctcgcgcagatggaggaacagctcaagccgcaggcgctcgagcggttcgccaac
atcacctcgatctacaagaaattctcgaagatccagcttgcccggctcgacgcaatgtcg
gccggcggcgagctcgcgtcggcacaggagcgcagctaccacaagctgcgcgaggaactg
accgcagaggtcgaatcggtccagttccacaacgccaagatcgagtatctggtcgaccag
ctttacagcttcaaccggcgcctcaccgctttgggcggccagatgctgcgccttgccgag
cgacacaaggtgccgcggaaggatttcctcgatcgctatgtcgatcacgagatggacgag
agcttcatcgccacggtcgagaagctggacaagaagtggaaggccttcgccgagaatgag
gcgccggcggtcgatcgcatccgcatcgagatcagcgaaatcagccaggcgaccggcatg
tcgctcaccgagttccgccgcatcgtcaacatggtccagaagggcgagcgcgaggcgcgc
atcgccaagaaggaaatggtcgaggcgaacctgcgcctcgtcatctcgatcgccaagaaa
tacaccaatcgcggcctgcagttcctggatctgatccaggagggtaatatcggcctgatg
aaggccgtcgataagttcgaatatcgccgcggctacaagttcagcacctatgcgacctgg
tggatccgccaggcgatcacccgcagcatagccgatcaggcgcgcacgatccgcatcccg
gtccatatgatcgagacgatcaacaagctggtccgcaccagccgccagttcctccacgag
cagggccgcgaacccacgcccgaggaaatggccgagcgcctctccatgccgctggagaag
gtgcgcaaggtgatgaagatcgccaaggagccgatcagcctcgagacgccgatcggcgac
gaggaggattcgcatctcggcgacttcatcgaggacaagaatgcggttatcccggttgat
gccgcgatccaggccaacctcaaggaaaccgtcacgcgggtgctcgcgtcgctcacgccg
cgcgaggagcgcgtgctgcggatgcgcttcggcatcgggatgaacaccgatcacacgctc
gaggaagtcggccagcaattcagcgtgactcgcgagcgaatccgccagatcgaggcgaag
gcgctgcgcaagctgaagcatccgagccggtcgcgaaaaatgcggtccttcctggatcag
tga
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