Sphingomonas sp. M1-B02: OKW87_03380
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Entry
OKW87_03380 CDS
T11063
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb03420
Nucleotide excision repair
spmb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OKW87_03380
03430 Mismatch repair
OKW87_03380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spmb03400
]
OKW87_03380
Enzymes [BR:
spmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OKW87_03380
DNA repair and recombination proteins [BR:
spmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OKW87_03380
MMR (mismatch excision repair)
Other MMR factors
OKW87_03380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_12
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UZK66889
LinkDB
All DBs
Position
complement(679632..681944)
Genome browser
AA seq
770 aa
AA seq
DB search
MNLPAPSHADAPYLASLNAPQRDAVLTTEGPVLVLAGAGTGKTAALTARLAHLLWTRKAY
PSELLAVTFTNKAAREMRERVGRLVGQAVEGMPWLGTFHAIGAKMLRRHAELVGLQSNFT
ILDTDDQLRLLKQLISAADLDEKRWPARSLAGLIDQWKNKGLTPKEIDAGESERYANGRG
QALYAAYQERLKTLNACDFGDLLLHMLVILKTHRDVLEQYQQRFRYILVDEYQDTNAVQY
LWLRLLAQERRNLCCVGDDDQSIYSWRGALVENILKFEKDFPGAKVIKLEQNYRSTPHIL
AAASGVIANNGGRLGKTLWTDKPEGEKVKVLGIWDGPEEARRVGEEIEGLQRGGLSLDDT
AILVRAQHQTREFEDRFIAIGLPYRIIGGFRFYERAEIRDALAYLRIVAQPSDDLAFERI
VNVPKRGLGDKALAKVHQYARAAQLPLATAAARILDTDELTPQARRALGNLIGDVARWRS
MGDTLPHPELARIILDESGYTAMWQADRTAEAAGRLENLNELVRAMEEYESLTGFLEHVS
LVMDNESNAEDAKVTIMTIHAAKGLEFDTVYLAGWEEGIFPSQRALDEGGLASLEEERRL
AYVAITRARRQATILHAANRRIYGQWTSSLPSRFIAELPAEHIAEESTMSGGASLWQANW
SDRADPFADVGRGTGRGPGWQRAAGVDPKNPGGTFHSRTFTREAPRVLEARASAVSFGAK
PRDDLSVGIRVFHQKFGYGLVAEIEGNKLEIDFEQAGRKRVMDSFVTLGA
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgaacctacccgcgccttcccatgccgacgccccttatctcgcgtcgctcaatgccccc
cagcgcgatgccgtgctcaccaccgaggggccggtcctcgtcctcgccggcgccgggacc
ggcaagaccgccgcgctcaccgcccggctcgcgcacctgctgtggacgcggaaagcctac
ccgtccgagctgctcgcggtcaccttcaccaacaaggccgcgcgcgagatgcgcgagcgg
gtcggccgcctcgtcggccaggcggtcgagggcatgccctggctcggcactttccacgcg
atcggcgccaagatgttgcgccgccacgccgagctggtcgggctacagtccaatttcacg
atcctcgataccgacgatcagctgcgcctgctcaagcagctcatctccgccgccgatctc
gacgagaagcgctggcccgcacgcagcctcgccgggctgatcgatcagtggaagaataag
ggcctcacccccaaggagatcgatgccggcgagtccgagcgctacgccaatggccgtggc
caggcgctctacgccgcctatcaggagcggctcaagacgctcaacgcctgcgatttcggc
gatctgttgctgcacatgctggtgatcctgaagacccaccgcgacgtgctcgaacagtat
cagcagcgcttccgctacatcctcgtcgacgagtatcaggataccaacgcggtccaatat
ctctggctgcgcctgctcgcccaagagcgccgcaacctctgctgcgtcggcgacgacgat
cagtcgatctattcgtggcgcggcgcgctggtcgagaatatcctgaagttcgaaaaggat
ttccccggcgccaaggtcatcaagctcgagcagaattaccgctcgacaccgcacatcctc
gccgccgccagcggggtcatcgccaacaatggcggccgcctcggcaagacgctttggacc
gacaagcccgagggcgagaaggtcaaggtcctcggcatctgggacggtcccgaggaggcg
cgccgggtcggggaagaaatagagggcctccagcgcggcgggctcagcctcgatgatacc
gcgatcctcgtccgcgcgcagcaccagacccgcgagttcgaggaccgcttcatcgcgatc
ggcctgccctatcgcatcatcggcggcttccgcttctacgagcgcgccgaaatccgcgat
gcgctcgcctatctgcgcatcgtcgcccagccttccgacgacctcgccttcgaacgcatc
gtcaacgtccccaagcgcggcctcggcgacaaggcgctcgccaaggtccaccaatatgcc
cgcgccgcgcaattgcccttggccaccgccgccgcgcgcatcctcgataccgacgagctc
actccccaggcccgccgcgcgctgggcaatctgatcggcgacgtggcccgctggcgatcg
atgggcgacaccctccctcatcccgagctcgcccgcatcatcctcgacgagagcggctac
accgcgatgtggcaggccgatcgcaccgccgaggccgccggtcgcctcgagaatctcaac
gagctcgtccgcgcgatggaggaatatgagtcgctcaccggcttcctcgaacatgtcagc
ctcgtcatggacaatgagagcaatgccgaggatgccaaagtcacgatcatgacgatccac
gccgccaaggggctcgagttcgacaccgtctatctggcgggctgggaggaaggcatcttc
ccgtcgcagcgcgcgctcgacgaaggcggcctcgccagcctcgaggaggagcgccggctc
gcctatgtcgcgatcacccgcgctcgccgccaggcgacgatcctccacgccgccaatcgc
cgcatctatggccaatggaccagcagcctgccctcgcgcttcatcgccgagctcccggcc
gagcatattgccgaggaatcgacgatgtcgggcggcgcgtcgttgtggcaggcgaactgg
agcgaccgtgccgatcccttcgccgacgtgggccgcggcaccgggcgcggccccggctgg
cagcgcgcggcgggcgtcgatcccaaaaatcccggcgggaccttccatagccgtaccttc
acccgcgaggcgccgcgagtattggaagcccgggcgagcgcagtcagcttcggggccaaa
ccgcgcgatgatctgtctgtggggatccgcgtcttccaccagaagttcggctacggcctg
gttgcggagatcgaaggcaacaagcttgagatcgatttcgaacaggcaggccgaaagcgc
gtgatggacagcttcgtgacgttaggggcctga
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