Sphingomonas sp. M1-B02: OKW87_04690
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Entry
OKW87_04690 CDS
T11063
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OKW87_04690 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spmb03400
]
OKW87_04690 (mfd)
Enzymes [BR:
spmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OKW87_04690 (mfd)
DNA repair and recombination proteins [BR:
spmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OKW87_04690 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
AAA_16
AAA_30
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UZK67133
LinkDB
All DBs
Position
973638..977093
Genome browser
AA seq
1151 aa
AA seq
DB search
MPDLKTILSAKRALTLSGAPTGFLPWMLADLARAAGTTVFIAPDEAAMRAIASTATYFAP
ELEILNYPAWDCLPYDRASPTLRIMSERLATLHALQTGSKAPRLLVTTVNAATQRTLTPF
RIRQLVARLAPGERISLPKLSSLLQANGYHRVDTVNDAGEFAVRGGLVDLFPSGADQALR
LDFFGDEIESVRTFDHQDQRTTGRVDGFTLLPASEALLDEESIKRFRSRYREKFGANATA
DPLYQAISDGRRLAGMEHWLPLFEDRLETLFDHLPDAAILVRDVAAHSAGEQRFEAIADY
QANRVRAESTAPGSYRPLDTASLYLSPEEWERAQEHGPVHTATPFHEPESATVLDFAVDG
PRDFAPERASAANVYEAVVEHLAKVRKAGKKPILASYSNGARERLTGLLNDHGLKGARSA
ESWQEALGTADSAVALIVLPLDHGFTARDVAVLTEQDMLGDRLVRRAKRRKNTDAFLAEL
ATLSPGDLVVHVDHGIGRYEGLTQIPVQQAPHDCVALSYAGGDKLFVPIENLEVLSRYGS
GEEGATLDKLGGEAWQRRKSKMKERIREIAGELIATAARRAVRPGEILEPDQGGYPAFVD
RFPYEETDDQDRAINDVLEDLASGRPMDRLIVGDVGFGKTEVALRAAFVAAMAGMQVTIV
CPTTLLARQHHRNFTERFQGFPINIGRLSRLVPAAEAKATKEGLADGTIDVVIGTHAILS
KGIEFKRLGLVIVDEEQRFGVTHKERLKALKADVHVLTLTATPIPRTLQMAMSGLRELSV
IQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQAYFVTPRISDLPEIEDFLRKDVPE
ISHVVAHGQMSPTEVEERMSAFYDRRYDLLVSTTIIESGLDIPSANTLIVNRADKFGLAQ
LYQIRGRVGRSKTRAYAYLTTPPERQMTEAADKRLKVLSDLETLGGGFQLAAHDLDIRGA
GNLLGDEQSGHIKEVGYELYQSMLEEAIMDAKAGGLRDDRPKDLSPSITVDAPIMIPEDY
VPDLDLRMGLYRRLNDVEDSAGIESFAAELIDRFGKLPDATENLLRLIETKLNAKRASIA
KIDVGPKGALVTFHEDKFPNVEGLMAYVEKLEGTARLRPDMKLVITRAWANPKARLHGAL
QISRGLARAAA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctaaaaaccatcctctccgccaagcgcgcgctgaccctctccggcgccccc
accggcttcctcccctggatgctggccgatctcgcgcgcgccgccggcaccaccgtgttc
atcgcccccgacgaagccgcaatgcgcgccatcgcctccaccgccacctatttcgcgcca
gagctcgaaatcctcaattatcccgcctgggactgcctcccctacgatcgcgcgtccccg
acgctgcgcatcatgtccgagcggctcgccaccctccacgcgctgcagacaggttcgaag
gccccccgcctcctcgtcaccaccgtcaacgccgccacccagcgcaccctcacccccttc
cgtatccgccagctcgtcgcgcggctcgcccccggcgagcggatcagcctgcccaagctc
tcctctctgctccaggccaacggctatcaccgtgtcgacacggtcaacgatgccggcgaa
ttcgccgtccgcggcggcctcgtcgatctcttcccgagcggcgccgaccaggcgctgcgc
ctcgatttcttcggcgacgagatcgaatcggtccgcaccttcgatcatcaggaccagcgc
accaccggccgggtcgacggcttcaccctgctccccgcctccgaagccctcctcgacgag
gaatcgatcaagcgcttccgcagccgctaccgcgagaaattcggcgccaacgccaccgcc
gatccgctctatcaggcaatcagcgacggccgccgcctcgccggcatggagcattggctg
cccttgttcgaggaccgcctcgaaaccctgttcgatcacctccccgacgctgcaatcctc
gtccgcgacgtcgccgcgcacagcgcaggcgagcagcgtttcgaggcgatcgccgattat
caggccaaccgcgtccgcgccgaatcgaccgcccccggcagctatcgcccgctcgacacc
gcctcgctctatctctccccggaggaatgggagcgcgcgcaggagcacggcccggtccac
accgccacccctttccacgaacccgaatcggccaccgtcctcgatttcgcggtcgacggc
ccgcgcgacttcgcccccgaacgcgccagtgccgccaacgtctacgaagccgtggtcgag
catctcgccaaggtccgcaaggccggcaagaagccgatcctcgccagctactccaacggc
gcccgcgaacgcctcaccggcctgctcaacgaccacggcctcaagggcgcccgctctgct
gaatcctggcaggaggctctgggcaccgcggacagcgcggttgccctcatcgtcctcccg
ctcgatcacggcttcaccgcgcgcgacgtcgccgtgctcaccgagcaggacatgctcggc
gatcgcctcgtccgccgcgccaagcgccgcaagaataccgacgccttcctcgcggagcta
gccaccctctcccccggcgatctcgtggtccatgtcgatcacggcatcggccgttacgag
ggcctgacccagatccccgtccagcaggccccgcacgattgcgttgcattgagctatgcc
ggcggcgacaaattgttcgtccccatcgaaaatctcgaagtcctctcgcgctacggctcg
ggcgaggaaggcgcgacgctcgacaagctcggcggcgaagcctggcagcggcgcaagtcg
aagatgaaggagcggatccgcgagattgcgggcgagctcatcgccaccgccgcgcgccgc
gccgtccgccccggcgagatactcgagcccgatcagggcggctaccccgccttcgtcgat
cgcttcccttatgaggaaaccgacgaccaggatcgtgcgatcaacgacgtgctcgaggat
ctcgcctcgggccgcccgatggaccgcctgatcgtcggcgatgtcggcttcggcaagacc
gaggtcgcactgcgcgccgccttcgtcgcggcgatggcgggcatgcaggtcacgatcgtc
tgcccgaccaccctcctcgcccgccagcaccaccgcaacttcaccgagcggttccagggc
ttcccgatcaacatcggccgcctctcgcgcctcgtccccgccgccgaggccaaggcgacc
aaggaaggcctcgccgacggcacgatcgacgtcgtcatcggcacccacgcgatcctctcc
aagggcatcgaattcaagcggctggggctcgtcatcgtcgacgaggagcagcgcttcggc
gtcacccacaaggagcggctgaaagcgctcaaggcggacgtccacgtcctcaccctcacc
gccacgccgatcccgcgcacgctccagatggcgatgtcgggcctgcgcgagctctccgtg
attcagaccccgccggtcgatcgcctcgcggtgcgcacctatgtcatgccctgggacccc
gtcgtcctgcgcgaggcgctgctgcgcgaacattatcgcggcggccaggcctatttcgtc
accccgcgaatctcggacctgcccgagatcgaggatttccttcgcaaggacgtgcccgag
atcagccatgtcgtcgcccacggccagatgtcgccgaccgaggtcgaggagcgcatgtcg
gccttctacgatcgtcgctacgatctgctcgtctcgaccacgatcatcgaatcgggcctc
gacatcccgtcggccaacacgctgatcgtcaaccgcgccgacaagttcggcctggcgcag
ctctaccagatccgcggccgcgtcggccggtccaagactcgcgcctacgcctatctcacc
accccgcccgaacgccagatgaccgaagccgccgacaaaaggctgaaggttctctccgac
ctcgagacgctcggcggcggcttccagctcgccgcgcacgatctcgacatccgcggcgcg
ggcaatctgctcggcgacgagcaatcgggccacatcaaggaagtcggctacgaactctac
cagtcgatgctggaggaggcgatcatggacgccaaggccggcggcctgcgcgacgatcgc
cccaaggacctctcgccctcgatcaccgtcgacgccccgatcatgatccccgaggactat
gtccccgatctcgatctgcgcatgggcctctaccgccgcctcaacgacgtcgaagacagc
gccggcatcgaaagcttcgctgccgagctgatcgatcgcttcggcaagctccccgacgcc
accgagaatctcctccgcctgatcgagaccaagctcaacgccaagcgcgccagcatcgcc
aagatcgacgtcggccccaagggcgcgctcgtcaccttccacgaagacaaattccccaat
gtcgagggcctgatggcctatgtcgaaaagctggaaggcaccgcccgcctgcgccccgac
atgaagctggtgatcacgcgggcatgggcgaaccccaaggcccgcctccacggcgcgctc
cagatctcgcgggggctggcccgggctgcagcctga
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integrated database retrieval system
