Sphingomonas sp. M1-B02: OKW87_06285
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Entry
OKW87_06285 CDS
T11063
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OKW87_06285 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spmb03021
]
OKW87_06285 (rpoC)
03400 DNA repair and recombination proteins [BR:
spmb03400
]
OKW87_06285 (rpoC)
Enzymes [BR:
spmb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OKW87_06285 (rpoC)
Transcription machinery [BR:
spmb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OKW87_06285 (rpoC)
DNA repair and recombination proteins [BR:
spmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OKW87_06285 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UZK67437
LinkDB
All DBs
Position
1314426..1318709
Genome browser
AA seq
1427 aa
AA seq
DB search
MNELTNFANPVAKPETFDQIQIGIASPDKIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKIMLMDLDLEGERKELLDELAVTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMMKENEPGEGMIIGDMSEVHQALNA
GAVTLHTKITSRVPQTDAEGKTYLKRYETTPGRMLLGETLPQNHKVPFETVNRLLTKKDV
GDVIDEVYRHTGQKETVLFADAIMALGFKHAFKAGISFGKDDMIIPDAKVGMVDETKALV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAGAMMDEIKAVRKLPNGREKDINSIYMM
AHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVIMENDCGTERALEMRAIVQGGSTIASLGERILGRTTA
EDVVDAKTNEVVIPSGTLLDEAMITQIEAIGLQGMKIRSPLVCEAKIGVCGKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEATSDGKVEFRDVRMI
MDQRGRRVVTSRSAELAIVDMDGRELAVHRIPYGAYVLFDDGHIVSQGDRMAEWDPFTMP
VITENPGIVKFVEIIEGKTMTEQVDEATGIAQRVITENRGMSAKKEDLRPRLTLTGETAE
EAGRYMLAAGAVLSVEDGATVHAGDVLARVSRESAKTRDITGGLPRVAELFEARKPKENA
IIAKVSGRVVFGKDYKAKRKIGIQPEDGSETVEYLVPKSKVIDVQEGDYVKRGDNLIGGS
PDPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITESGDTTL
LVGEQLDRDEMDEQNAKLGKNETPAQGKPILLGITKASLQTRSFISAASFQETTRVLTEA
AVQGKQDTLIGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAALRVAQRRVDAAALIAPN
SAAEEREAEHARSTRDAGGTGDDALASVVPSGHGTDEDAGEYLNKSE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaacttcgcgaacccggtggccaagccggagaccttcgaccagatc
cagatcggcatcgcgtctccggacaagatccgcagctggtcgttcggcgagatcaagaag
cccgagaccatcaactatcgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggactatgagtgcctgtgcggcaagtataagcgcatgaaatat
aagggcatcgtctgcgagaagtgcggcgtcgaggttaccgtctcgaaggttcgccgcgag
cggatgggccacatcgagctcgccgcgcccgtagcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctctat
ttcgagagctacatcgtcaccgagccgggcctgactccgctcgagaagttccagctcctc
accgaggacgaactgctcgacgcgcaggatgaatatggcgaagacgccttctccgccggg
atcggcgccgaagcggtcaagatcatgctcatggatctcgacctcgaaggcgagcgcaag
gagctgctcgacgagctcgcggtcaccaagtccgagctgaagcccaagaagatcatcaag
cggctgaaggtcgtcgaaagcttcatcgattcgggcaatcgccccgaatggatgatcctc
gacgtcgttccggtcatcccgcccgagctgcgcccgctggtgccgctggacggtggccgc
ttcgcgacttcggatctcaacgatctgtatcgccgcgtgatcaaccgtaacaaccgcctg
aagcggctgatggaactgcgcgcgccggacatcatcgtccgcaacgagaagcgcatgttg
caggaagccgtcgacgcgctgttcgacaacggtcgccgcggtcgcacgatcacgggtgcc
aataagcgtccgctcaagtcgctctcggacatgctcaagggtaagcagggccgcttccgt
cagaacctgctcggcaaacgcgtcgactattcgggtcgttcggtcatcgtgaccgggcct
gagctgaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctacgcgcgcctcgacgccaagggtctgtcgatgaccctcaagcaggcgaagaag
tgggtcgagaaggagcggaaggaagtctgggacatcctggacgaggtgatccgcgagcat
ccggtgatgctgaaccgcgcgccgacgctgcaccgtctgggcatccaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagctgcatccgctggtatgctcggccttcaacgcc
gatttcgacggcgatcagatggccgtgcacgtacccctgagcctcgaagcgcagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgcaaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggcctttattatctgtcgatgatgaaggagaac
gagccgggcgaaggcatgatcatcggcgacatgtccgaggtccaccaggcgctcaacgcc
ggcgcggtcaccctccacacgaagatcaccagccgcgtcccgcagaccgatgcggagggc
aagacctatctcaagcgctacgagaccaccccgggccgcatgctgctgggcgagaccctg
ccgcagaaccacaaggtgcccttcgagaccgtcaaccgcctcctcaccaagaaggatgtg
ggcgacgtgatcgacgaggtctatcgccacaccggccagaaggagaccgtgctgttcgcc
gacgcgatcatggcactgggcttcaagcacgcgttcaaggcgggcatctcgttcggcaag
gacgacatgatcatcccggacgccaaggtcggcatggtcgacgagaccaaggcgctcgtg
aaggactatgagcagcaatatcaggacggcctgatcacgcagcaggagaagtataacaag
gtgatcgacgcctggagccgttgcggcgatcaggtggcgggcgcgatgatggacgagatc
aaggcagtccggaagcttccgaacggccgcgagaaggacatcaactcgatctacatgatg
gcccactcgggtgcccgcggttcgcaggcccagatcaagcagctcgccggcatgcgcggc
ctgatggccaagccttcgggcgagatcatcgagacgccgatcatctcgaacttcaaggaa
ggcctgaccgtccttgaatatttcaactccacccacggcgcccgcaagggtctcgcggat
acggcgctgaagaccgccaattcgggctacctcacgcggcgtctcgtcgacgtgtcgcag
gattgcgtgatcatggagaatgattgcggcaccgagcgtgcgctcgaaatgcgcgcgatc
gtccagggcggttcgaccatcgcgtcgctcggcgagcgcatcctcggccgcaccacggcg
gaagatgtggtcgatgccaagaccaacgaggtcgtcatcccttcgggcacgttgctcgac
gaggcgatgatcacgcagatcgaggcgatcgggcttcaggggatgaagatccgttcgccg
ctggtctgcgaagccaagatcggtgtctgcggcaaatgctacgggcgcgatctcgcccgc
ggtacgccggtgaacatcggcgaggcagtcggcgtcatcgcggcgcagtcgatcggcgag
cccggcacccagctgacgatgcggaccttccacatcggcggcgcggcgcagctcaacgag
cagtccaacctcgaggcgacttcggacggcaaggtcgaattccgcgacgtccgcatgatc
atggatcagcgcggccgccgggtggtgacgtcgcgttcggccgagctggcgatcgtcgac
atggacggccgcgagctggcggtgcaccgtattccgtacggcgcctatgtgctgttcgac
gatggacacatcgtctcgcagggcgatcggatggccgaatgggatccgttcaccatgccg
gtgatcaccgagaatcccggcatcgtgaagttcgtcgagatcatcgaaggcaagacgatg
accgagcaggtcgatgaggcgacgggcatcgcccagcgcgtcatcaccgagaatcgcggc
atgtcggcgaagaaggaagatcttcgtccgcgcctgaccctcaccggcgaaaccgccgag
gaggccggtcgctacatgctggcggcgggcgcagtgctctcggtcgaggatggtgccacg
gtgcatgcaggcgacgttctcgcccgcgtcagccgcgaatccgccaagacccgcgacatc
accggcggtctgccgcgcgtcgccgagctcttcgaggcacgcaagccgaaggagaatgcg
atcatcgcaaaggtctcgggccgtgtcgtgttcggcaaggactataaggccaagcgcaag
atcggcatccagcccgaggacggcagcgagacggtcgaatatctggtgcccaagtcgaag
gtcatcgacgtccaggaaggcgattacgtcaagcgcggcgacaatctgatcggcggttcg
cccgatccgcacgacattctcgaggtgctcggcatcgagccgctcgcggaatatctcgtg
tcggaaatccaggaggtctatcgtctccagggcgtgaagatcaacgacaagcatatcgag
gtgatcgttcgccagatgctgcagaaggtcgagatcaccgagtccggcgacaccaccttg
ctcgtgggcgaacagctcgaccgcgacgagatggacgagcagaacgccaagctcggcaag
aacgagactccggcgcagggcaagcccatcctgctcggcatcaccaaggcgtcgctgcag
acccgcagcttcatctcggcggcgtcgttccaggaaaccacgcgcgtcctcaccgaggcc
gccgtgcagggcaagcaggacacgctgatcggcctcaaggagaatgtcatcgtcggccgg
ctgatcccggcaggtaccggcgccggcatgaaccgcctgcgcgtggcagcttcgtcgcgg
gatgcggcactccgcgtggcccagcgccgcgtcgatgccgcagccctgatcgcgccgaac
tcggccgccgaagagcgtgaagccgagcatgcccgctcgacccgggacgccggtggcacc
ggtgacgacgcgctggcaagcgtggttcccagcggccacggcaccgacgaggatgccggc
gagtatctgaacaagagcgagtaa
DBGET
integrated database retrieval system
