Sphingomonas sp. M1-B02: OKW87_07180
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Entry
OKW87_07180 CDS
T11063
Name
(GenBank) long-chain fatty acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb00061
Fatty acid biosynthesis
spmb00071
Fatty acid degradation
spmb01100
Metabolic pathways
spmb01212
Fatty acid metabolism
spmb02024
Quorum sensing
spmb04146
Peroxisome
Module
spmb_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
OKW87_07180
00071 Fatty acid degradation
OKW87_07180
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
OKW87_07180
09145 Cellular community - prokaryotes
02024 Quorum sensing
OKW87_07180
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
spmb01004
]
OKW87_07180
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spmb04147
]
OKW87_07180
Enzymes [BR:
spmb01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
OKW87_07180
Lipid biosynthesis proteins [BR:
spmb01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
OKW87_07180
Exosome [BR:
spmb04147
]
Exosomal proteins
Exosomal proteins of breast milk
OKW87_07180
Exosomal proteins of breast cancer cells
OKW87_07180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Cas_VVA1548
AMP-binding_C_3
DUF4218
Motif
Other DBs
NCBI-ProteinID:
UZK67602
LinkDB
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Position
1480678..1482354
Genome browser
AA seq
558 aa
AA seq
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MTDSETVWRTAYHHPGAWDDPLPPLSMVELFEASARAHPQAPLLDFLGRKYSYGETLAGA
NRVACGLKALGYGRGDRIGLFLPNVPHYVAAYYGILKLGAIVVNFSPLYSVEELAAQVED
SGVRLLFTISASALLPTALKVLDQSGLERLVVGSVAGGLPGPKSLLYRLFKRSEIAKRPV
DPRILSFSKLIANDGACETVPIDPEQELALIQYTGGTTGVPKGAMLTHQNLSANARQVAK
LDPDMGQAGDRIMGALPFFHVFANTCVLNRTVLTGGEIVMLPRFNAEQVLAALRRTRPSA
LPGVPTMYQALLDAPGMKPDDFSSLKFCICGGAPLSEQLRTTFQDLTGARLIEGYGLSES
SGVVSCNPYVGLSKIGTIGQPLARTRVRLVDKEDPTRPPPSGEPGEIVVSGPQIMKGYWN
RPDADAYTFVDDHWLRTGDVGTIDEEGYIRIVDRLKDMIAVGGFKVFPSQIEAVLYRHPA
VKEALVLGLPDSYHGEMPHAYVTLNDDAEIGGEELARWLNPQLGKHERVRDVVVRQSLPK
TMIGKLSRKDLLAEVLAA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattccgagactgtctggcgtaccgcataccatcatcccggcgcctgggacgac
ccgctgcctccgctatcgatggtcgaattgttcgaggcgagcgcccgcgcgcatccgcag
gcgccgctgctcgatttcctgggccgcaaatatagctatggggaaaccctggccggcgcc
aaccgggttgcctgcgggctgaaggcgctgggctatggccgcggcgaccggatcgggctc
tttttgcctaacgtgccgcattatgtcgcagcctattacggcatcctcaagctcggcgcg
atcgtcgtcaatttctcgcctctgtattcggtcgaggagcttgccgcgcaggtcgaggat
tcgggggttcggctgctcttcacgatttcggccagcgccctgctgccgaccgcgctcaag
gtgctcgaccagagcgggctcgagcggctggtggtgggatcggtggcgggcgggctgccg
ggacccaagtcactgctctaccgattgttcaagcggagcgagatcgccaagcggcccgtc
gatccccgcattctctccttttcgaaactgatcgccaatgacggggcctgcgagaccgtg
ccgatcgaccccgagcaggaactggcgctgatccaatataccggcggcaccaccggcgtt
cccaagggtgcgatgctcacccaccagaatttgtcggcgaatgcgcggcaggtggcgaag
ctcgatcccgacatgggccaggccggcgatcggatcatgggcgccctccccttcttccac
gtcttcgccaatacctgcgtgctcaaccgcaccgtgctgaccggtggcgagatcgtgatg
ctgccgcgcttcaacgccgagcaggtgctcgcggcactgcgccgcactcgcccaagcgcg
ctgcccggagtcccgacgatgtaccaggcgctgctcgatgcgccgggaatgaagcccgac
gatttcagctcgctcaaattctgcatctgcggcggcgcacccttgtccgagcagctgcgc
accacctttcaggacctgaccggcgctcggttgatcgaaggctatggcttgtccgaaagt
tcgggcgtggtctcgtgcaatccctatgtcgggctcagcaagatcggcacgatcggccag
ccgctggcccgtacccgcgtacggctggtcgacaaggaggacccgacccgtcctccgccc
tcgggcgagcccggcgagatcgtcgtatccggcccccagatcatgaagggctattggaac
cggcccgacgccgatgcctataccttcgtcgacgatcattggctgcgcaccggcgacgtc
ggcacgatcgacgaggaaggctatatccgcatcgtcgaccggctgaaggacatgatcgcg
gtcggcgggttcaaggtctttccgagtcagatcgaggcggtgctttatcgccatccggcg
gtgaaggaggcgctcgttctggggctgcccgattcctatcatggcgaaatgccgcacgcc
tatgtgacgctgaacgacgatgccgagatcggcggcgaagagctggcccgctggctcaac
ccgcaactcggcaagcatgagcgcgtccgcgacgtggtggtgcggcagagcctgccgaag
acgatgatcggcaagctcagccgcaaggatttgctggccgaagtgctggcggcctag
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