Sphingomonas sp. M1-B02: OKW87_10985
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Entry
OKW87_10985 CDS
T11063
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb00521
Streptomycin biosynthesis
spmb00523
Polyketide sugar unit biosynthesis
spmb00525
Acarbose and validamycin biosynthesis
spmb00541
Biosynthesis of various nucleotide sugars
spmb01100
Metabolic pathways
spmb01110
Biosynthesis of secondary metabolites
spmb01250
Biosynthesis of nucleotide sugars
Module
spmb_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
OKW87_10985 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
OKW87_10985 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
OKW87_10985 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
OKW87_10985 (rfbB)
00525 Acarbose and validamycin biosynthesis
OKW87_10985 (rfbB)
Enzymes [BR:
spmb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
OKW87_10985 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
KR
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
UZK65038
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Position
complement(2281763..2282815)
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AA seq
350 aa
AA seq
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MRVLVTGGAGFIGSALVRHLIAHSEHEVLNFDKLTYAGSLTTVETVAASNRYRFVRGDIC
DAETVRATIAEFRPDVITHLAAESHVDRSIDGPGAFIQTNLVGTYTMLAEARAYWQALDP
ASQERFRFHHISTDEVYGSLGPTGLFTEDTPYDPRSPYSASKAGSDHLVSAWGHTFGLPV
IVTNCSNNYGPYHFPEKLIPLVIVKALAGEPLPIYGKGDQVRDWLYVEDHVAALQAAFER
GTPGRTYNVGGNNEKQNIEVVKTICTILDRVRPRADGQPYAAQITHVADRPGHDMRYAID
ASRIATELGWTPKESFESGIEKTVHWYLENEAWWRPLVEAKAAERRGVTS
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtgttggttaccggcggcgccggcttcattggctcggcgctggtccgccatctg
atcgcgcatagcgagcatgaagtgctcaacttcgacaagctgacctatgccgggtcgttg
acgacggtggagacggtggccgccagcaatcgctaccgtttcgtgcggggcgatatctgc
gacgccgagacggtgcgcgcgacgatcgccgagttccgcccggacgtcatcacccacctg
gcggcggagagccatgtcgatcgctcgatcgacgggccgggcgctttcatccagaccaac
ctggtcggcacctacacgatgctcgcagaggcccgcgcttattggcaggcgctcgatccc
gcgtcgcaggagcgcttccgcttccatcatatctcgaccgacgaagtctatggctcgctc
ggaccgacggggcttttcaccgaagacacgccttatgatccgcgctcgccttattcggcg
tcgaaggccggatcggatcacctggtctcggcatgggggcacacgttcggcttgccggtg
atcgtgaccaattgttcgaacaattacggcccctaccattttcccgagaagctgatcccg
ctcgtcatcgtgaaggcgctcgcgggcgagccgctgcccatttatggcaagggcgatcag
gtgcgcgactggctgtacgtcgaggaccatgtcgcggcgctgcaggcggcgttcgagcgc
ggcacgccgggccggacctacaatgtcggcggcaacaacgagaagcagaatatcgaggtg
gtcaagaccatctgcacgatcctcgaccgggtgcgtccgcgtgcggacgggcagccttat
gcggcgcagatcacccatgtcgccgatcgtccggggcatgacatgcgctatgcgatcgat
gcgagccggatcgccaccgaactgggctggacccccaaggagagcttcgagagcggcatc
gagaagaccgtccactggtatctcgaaaacgaagcctggtggcgcccgctcgtggaggcg
aaggcggccgagcggcgtggcgtgacttcgtga
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