Sphingomonas sp. M1-B02: OKW87_12835
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Entry
OKW87_12835 CDS
T11063
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OKW87_12835 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spmb03400
]
OKW87_12835 (ligD)
Enzymes [BR:
spmb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OKW87_12835 (ligD)
DNA repair and recombination proteins [BR:
spmb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OKW87_12835 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UZK65389
LinkDB
All DBs
Position
complement(2655554..2658079)
Genome browser
AA seq
841 aa
AA seq
DB search
MPDNADLLARYNAKRDFTQTGEPAGQIADTGGNRFMVQKHDASRLHWDLRLEVDGVLKSW
AVTRGPSIDPDEKRLAVRTEDHPLSYADFEGTIPKGQYGGGTVMLWDDGVWAPIEGKSAK
DLEQGHLHFRLQGERMKGEWMLIRLKPRGKEKGENWLLRKVTDQFAGATDFLVETGLTSI
KTGRTMQEIAEGKRPDKVLPRRGRGTSEAGGGGAPQASRARKAPSTTAARRSPSPSRGGK
GTPPAFQPPQLATLVDAVPTGSNWLHEVKYDGYRALIALGASPKVYTRSGLDWTDKFPGI
AEAAATIPGPGLIDGEIVAYKDGKPDFSTLQEAISAGGKNLTFFAFDVLNDRGEDTTKLP
QLARKERLRALLESADERVQFSEHIVGAGEKLFETMCREGYEGVISKRADSPYRGSRTKS
WLKIKCTRRQEFVIVGWSPSVAKGRGFRSLLLAVNGPDGLVYAGKVGTGFNQQTLNDLRE
RFDKIAVEKASLSVPKPEARGAKWIKPILVAEVAFAEFTAENVVRHASFLGLRQDKKAKD
VVVEKPVPLPEPAPETHIKISSRDRVIYPESGLTKGELADYYQAVAPIALRWLANRPISL
VRCPQGRAKHCFFQKHDAGSFGEEVHHVDIREKDGSTEPYLYVDDLDGIMACVQMGTIEF
HGWGSLVADVEKPDRLVFDLDPDEGLDFEMVKKAAEDLKGHLADIGLTSWPLLSGGKGVH
VVVPLVPKAEWPEVRSFAERFARALASAEPDRFTANLKKATRKGKIFIDYLRNQRGATAV
LPYVARARENAPVSAPITWSELRGLEKSQPYTIRDAATLIERASSRALQGWGEAAQELPD
L
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgacaacgccgatctcctcgccagatataacgccaagcgcgacttcacgcagacc
ggcgagcccgcgggtcagatcgccgacaccggcggcaatcgcttcatggttcagaagcac
gacgccagccggctccactgggacctgcgtctcgaagtcgacggcgtcctcaaaagctgg
gcggtcacccgcggccccagcatcgaccccgacgaaaagcgcttggccgtgcgcaccgag
gatcacccgctctcctacgccgatttcgaaggcacgatccccaagggccaatatggcggc
gggacggtgatgctgtgggacgacggcgtctgggcgccgatcgagggcaaatccgccaag
gatctcgagcagggacatctccacttccgccttcagggcgagcggatgaagggcgaatgg
atgctcatccgcctgaagccgcgcggcaaggagaaaggcgagaattggctgctgcgaaaa
gtcaccgaccaatttgccggcgccaccgatttcctggtcgaaaccgggctgaccagcatc
aagaccggccggacgatgcaagagatcgccgaggggaagaggccagataaagtcctcccc
cgaagggggagggggaccagcgaagctggtggagggggcgcgccgcaagcgtctcgcgcg
cggaaagccccctccaccaccgctgcgcggcggtccccctccccgtcccggggaggaaag
ggcacccccccggccttccagcccccccagctcgccaccctggtcgacgccgtccccacc
ggcagcaactggctccacgaagtaaaatatgacggctaccgcgcgctcatcgcgctgggc
gccagccccaaagtctacacccgctcgggcctcgactggaccgacaaattccccggcatc
gccgaagcggcagccacgatccccggccccgggctgatcgacggcgagatcgtcgcctat
aaggacggcaagcccgatttctccacgctccaggaagcgatctccgccggcggcaagaac
ctgaccttcttcgccttcgacgtgctcaacgaccgcggcgaggacaccaccaagctcccc
cagcttgcgcgcaaggagcgcctgcgcgccctcctcgaatccgccgacgagcgggttcaa
ttctccgaacatatcgtcggcgcgggcgagaaattgttcgagacgatgtgccgcgaaggc
tatgagggcgtgatctcgaagcgcgccgattcgccctatcgcggcagccgcaccaagagc
tggctcaagatcaaatgcacccgccgccaggaattcgtcatcgtcggctggagcccgagc
gtcgccaagggccgcggcttccgctcgcttctccttgcggtcaacggccccgacgggctg
gtctatgccggcaaggtggggacgggcttcaaccagcagaccttgaatgatctgcgcgaa
cgcttcgacaagatcgccgttgaaaaggcgtcgctgtcggtgcccaagcccgaagcgcgc
ggcgccaaatggatcaaaccgatcctcgtcgccgaagtcgccttcgccgaattcaccgcc
gagaatgtcgtccgccacgccagcttcctcggcctgcgccaggacaagaaggccaaggac
gtcgtcgtcgagaagcccgtgccgctgcccgagcccgcgcccgagacgcatatcaagatc
agcagccgcgatcgagtgatctatcccgaatccggcctcaccaagggcgagctcgccgat
tattaccaggcggtcgccccgatcgctttgcgctggctcgctaaccgcccgatcagcctc
gtccgctgcccccagggccgcgccaaacactgtttcttccaaaagcacgacgccggcagc
ttcggcgaggaagtccatcatgtcgacattcgcgagaaggatggctcgaccgaaccctat
ctctatgtcgacgatctcgacgggatcatggcctgcgtccagatgggcacgatcgagttc
cacggctggggcagcctcgtcgccgatgtcgagaagcccgatcggctggtgttcgatctc
gatcccgacgaggggctcgatttcgagatggtcaagaaggccgccgaggatctgaagggc
catctcgccgatatcgggctcaccagctggccgttgctgtccggcggcaagggcgtccat
gtcgtcgtgccgctggtgcccaaggccgaatggcccgaagtccgctccttcgcggagcgt
ttcgcccgcgcgctcgccagcgccgagcccgatcgcttcaccgcgaacctcaagaaggcg
acccgcaagggcaagatcttcatcgactatctgcgcaaccagcgcggcgcgaccgccgtc
ctgccctatgtcgcccgcgcccgcgaaaatgcccccgtctcggcgccgatcacctggagc
gaactgcgcgggctggaaaagtcccaaccctatacgatccgcgacgcggcgacgctgatc
gaacgcgcgagcagccgggcgctgcagggctggggcgaagcggcgcaggaattgccggac
ctctaa
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