Sphingomonas sp. M1-B02: OKW87_13305
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Entry
OKW87_13305 CDS
T11063
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OKW87_13305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spmb03400
]
OKW87_13305
Enzymes [BR:
spmb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
OKW87_13305
DNA repair and recombination proteins [BR:
spmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
OKW87_13305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
UQCC3
Motif
Other DBs
NCBI-ProteinID:
UZK65478
LinkDB
All DBs
Position
complement(2776698..2778080)
Genome browser
AA seq
460 aa
AA seq
DB search
MRVVTLTSEDDYEGWRDAARALAQGRVPPSEILWQVGDAPTDLFGDEAVLEPAAPAAFRV
PRAFLDLAQSVILHSDPQRFALLYTLLVGLIEQPRRIDDRADPLVRRLEEMAKHVRRDIH
KMRAFLRFREVEDAGTVRFVAWFEPEHHIVRANARFFVDRFAAMHWSILTPELSLHWDGE
TLAEGPPATRADAPEGDPIEEMWKTYYASIFNPARLKTGAMLKEMPKKYWKNMPETALVK
ELVAGARARETAMVQTARDSVGGNIAGAWEALRDEAKGCTRCHLHKPATQTVFGEGPVDA
RMLFMGEQPGDQEDLAARPFVGPAGQMFDRAMAEAGIDRSGVYVTNAVKHFKFEPRGKRR
IHAKPDGGEISACRWWYEQERLLIKPEMTVALGATAARQMLGKVVTISGARGRAIELAEG
GMGWVTVHPSFLLRLPDKTRVEEEYAAFVEDLKGAAKALC
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtggtgacgctgacgagcgaagacgattatgagggctggcgcgatgccgcgcgg
gcgctggcccagggccgcgtgccgccatccgaaatcctgtggcaagtgggcgatgccccc
accgacctgttcggcgacgaagccgtgctggagcccgccgcccccgccgcgttccgcgtg
ccccgcgccttcctcgacctcgcgcagagcgtgatcctccacagcgatccgcagcgcttc
gccttgctctacacgctcctcgtcgggctgatcgagcagcctcgccggatcgacgaccgc
gccgatccgctggtgcgtaggctcgaggagatggccaagcacgtccgccgggacatccac
aagatgcgcgccttcctccgcttccgcgaggtcgaggacgcagggacggtgcgcttcgtc
gcctggttcgagcccgaacatcatatcgtccgcgccaatgcgcgcttcttcgtcgatcgt
ttcgcggcgatgcactggtcgatcctgacccccgaactgtcgctgcactgggacggcgaa
acgctggccgagggcccgcccgcaaccagggccgacgcccccgaaggcgatccgatcgag
gagatgtggaaaacctattacgcctcgatcttcaatccggcgcggctgaagaccggcgcg
atgctgaaggagatgccgaagaaatattggaagaatatgcccgagacggctttggtcaag
gaactggttgcgggcgcacgggcgcgggagacggcgatggtacagacggcgcgcgacagc
gtcggcggcaacatcgccggcgcctgggaggcattgcgcgacgaagccaagggctgcacc
cgctgccacctccacaagcccgcgacgcagactgtgttcggcgagggcccggtggacgcg
cggatgctgttcatgggcgagcagccgggcgaccaggaggatctcgcagcgcgcccgttc
gtcggcccggccggacagatgttcgatcgcgcgatggccgaggcggggatcgaccgaagc
ggtgtctacgtcaccaatgcagtcaagcatttcaagttcgagccgcgtggcaagcgccgc
atccacgccaagcccgatggcggcgagatcagcgcatgccgctggtggtacgagcaggaa
cggctgctgatcaaacccgaaatgaccgtggcgttgggcgccaccgcggcacgccagatg
ctgggcaaggtcgtgacgatcagtggcgcccgcgggcgcgcgatcgagttggccgagggc
ggtatgggctgggtgacggtccacccaagcttcctgctccgcctgcccgacaaaacccgc
gtcgaggaggagtatgccgcattcgtcgaggatttgaagggcgcggcgaaggcgctgtgc
tag
DBGET
integrated database retrieval system
