Sphingomonas sp. M1-B02: OKW87_13560
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Entry
OKW87_13560 CDS
T11063
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OKW87_13560 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spmb03019
]
OKW87_13560 (recQ)
03400 DNA repair and recombination proteins [BR:
spmb03400
]
OKW87_13560 (recQ)
Enzymes [BR:
spmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OKW87_13560 (recQ)
Messenger RNA biogenesis [BR:
spmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OKW87_13560 (recQ)
DNA repair and recombination proteins [BR:
spmb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OKW87_13560 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
UZK65526
LinkDB
All DBs
Position
2822530..2824305
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AA seq
591 aa
AA seq
DB search
MNDPLEILRTTFGFPGFRGVQPQVIERVMAAQNTLAVMPTGAGKSLCYQVPSLALEGTCV
VVSPLIALMHDQLRAAEAVGIRAATLTSADDNREETIARFRGGQLDLLYVAPERASGEGF
RNLLSQTRLSLFAIDEAHCVSEWGHDFRPDYRLLRPLLDRFPEVPRLALTATADAHTRAD
ILEQLGIPSDGLIIAGFDRPNIRYLISPRENTTRQVQDLLAEQPGPGIVYAQTRASVEKL
ADKLGENGRTVLPYHAGLDPAVRRRNQAAFVASEEMVIVATVAFGMGIDKPDVRFVAHAG
LPKSIEAYYQETGRAGRDGDPAVAHLFWGADDFARARQRIGEVEPRRQPGERTRLSALGA
LVETAGCRRRILLRHFGERDAPENCGNCDNCLSPPSAIDASVTAQKFLSAVFRTNMTFGV
GYIESLLLGQSTERSLMNGHEKLSVFGIVSGDEAALLKPVARALLLRDALRANAHGGLEF
GPEAKALLKGEAELKLVLPPKRERRGRRGDGRPGGANPIGDPLFEALRAKRRELAQEAQV
PPYVIFHDSVLRDMAAARPASIDALGRISGVGVRKLEAYGSAFLQVIREAA
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgatccgcttgaaatcctccgcacgaccttcggcttccccggcttccggggagtg
cagccgcaggtgatcgagcgggtgatggcggcgcagaatacgctggcggtgatgccgacc
ggcgcgggcaagtcgctttgctatcaggtgccgagcctggccttggagggaacctgcgtc
gtcgtctcgccgctgatcgcgctgatgcacgaccagctgcgcgcggccgaggcggtgggg
atccgcgcggcgacgctgaccagcgccgacgacaatcgcgaggagacgatcgcgcggttt
cgcggcgggcagctcgacctgctctatgtcgcgcccgagcgggcgtcgggggaggggttc
cgcaacctgctgagccagacgcggctgagcctgtttgcgatcgacgaggcgcattgcgtg
tccgaatgggggcatgatttccggccggattaccggctgttgcgaccgttgctcgatcgc
tttcccgaggtgccgcggctcgcgctgaccgcgaccgccgatgcgcatacccgcgccgac
atcctcgaacagctcggcattccgagcgacgggctgatcattgccgggttcgaccggccc
aatatccgctacctgatctccccccgcgaaaacacgacccggcaggtgcaggatttgctc
gccgagcagccggggccggggatcgtctatgcgcagacgcgcgcctcggtggagaagctg
gcggacaagctcggcgagaatgggcggacggtgctgccttatcatgccgggctcgatccc
gcggtgcggcggcgcaaccaggcggcgttcgtggcgagcgaggagatggtgatcgtcgcg
acggtcgcgttcggaatggggatcgacaagcccgacgtccgtttcgtggcccacgccggg
ctgcccaaatcgatcgaggcttattatcaggaaaccggccgtgccgggcgcgacggcgat
ccggcggtggcgcatttgttttggggcgcggacgatttcgcgcgggcgcggcagcggatc
ggcgaagtcgagccgcggcggcagccgggcgagcggacgcggctttcggcgctgggggcg
ctggtcgagacggccggatgccggcggcggatcctgctcaggcatttcggagagagggat
gcgccggagaattgcggcaattgcgacaattgcctgagcccgccgagcgcgatcgacgcg
agcgtgaccgcgcagaaattcctgtcggcggtgttccgcaccaacatgaccttcggggtc
ggctatatcgagagcctgctgctcggccagtcgaccgaacgcagtctgatgaacgggcat
gagaaattgtcggtcttcgggatcgtatcgggcgacgaggccgcgttgctgaagcccgtg
gcgcgggcgctgctgctgcgcgacgcgttgcgcgccaatgcgcatggcgggctcgaattc
gggcccgaggccaaggcgctgctgaagggcgaggcggaactcaagctggtgctgccgccc
aagcgcgagcggcgcgggcggcgcggtgacggcagaccgggcggggccaatccgatcggc
gatccgctgttcgaggcactgcgggcgaagcggcgcgagctggcgcaggaggcgcaggtg
ccgccttatgtgatcttccacgattcggtgctgcgcgacatggcggcggcgcggcccgcg
agcatcgatgcgctgggccgcatctcgggcgttggcgtgcgcaagctggaggcttatggt
tcggccttcctccaggtgatccgcgaggcggcatga
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