Sphingomonas sp. M1-B02: OKW87_13705
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Entry
OKW87_13705 CDS
T11063
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb02020
Two-component system
spmb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OKW87_13705 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OKW87_13705 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spmb03021
]
OKW87_13705 (rpoN)
Transcription machinery [BR:
spmb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OKW87_13705 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_IclR
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
UZK65555
LinkDB
All DBs
Position
2850743..2852257
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AA seq
504 aa
AA seq
DB search
MSLAPRLDLRQSQSLVMTPQLQQAIKLLALSNLEIETFIAEELEKNPLLESQGGGEDAPD
VAAPEPVPDFEEVRDGPADASELIQGGEAAGEAALDVDFTAESFHHDSASDSVGSLDGSL
GLSGASGGSGSEDGPDFDNFGSSQLSLADHLMAQAGASVSGADLFIAAHLIDQIDEAGYL
TASLLDVANRLNVPLARVEAVLGIIHGFDPTGVGARNLAECLALQAKEADRYDPCMARLI
DNLDLVARGDMARLRRICDVDEEDLADMIRELRNYDPKPGCRYGGEPTLSVVPDIFVARR
GAGWAIEINAATLPRVLVNRAYYTEIATGHQDKSSKAWLSDMLASANWLVKALDQRQRTI
IKVASEIVKQQEAFFLKGVAHLKPMTLRQVADAIEMHESTVSRVTSNKYLSCARGLFELK
YFFTSAIQSADGGDAVSAQAVKSAIRALITAEDAKAILSDDTLVDLLREKGFDIARRTVA
KYREALGIGSSVQRRRQKALEGVG
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcgcgcctcgcctcgacctgcggcagtcgcaatcgctggtgatgacgccgcag
ctgcagcaggcgataaagctgcttgcgctgtcgaacctcgagatcgagactttcatcgcc
gaggagctggaaaagaatcccctgctcgaatcgcagggcggcggcgaggatgcgcccgac
gtggcggcacccgagccggtgcccgatttcgaggaggtacgcgatggtccggccgatgca
agcgagctgatccaaggcggcgaggcggcgggcgaggctgcgctcgacgtggatttcacc
gccgaaagctttcaccatgacagcgcctcggactcggtcggcagcctcgacggcagcctg
gggctgagcggggcgagcggcggcagcggatccgaggatgggcccgacttcgacaatttc
ggtagcagccagctgagcctggccgaccatctgatggcgcaggcgggggccagcgtgagc
ggcgcggacctgttcattgccgcgcatctgatcgaccagatcgacgaagcgggctatctg
accgcgtcgctgctcgacgtcgccaatcgcttgaacgtgccgctggcgcgggtcgaggcg
gtgctcggcatcatccacggcttcgatcccaccggggtgggcgcgcgcaacctggccgaa
tgcctggcgctgcaggccaaggaggccgatcgctacgatccgtgcatggcgcggctgatc
gacaatctcgatctggtcgcgcgcggcgacatggcgcggctgcggcggatctgcgacgtc
gacgaggaagatctggccgacatgatccgcgagctgcgcaactacgaccccaagcccggc
tgccgctatggcggcgagccgacgctgtcggtggtgccggacatcttcgtcgcgcggcgc
ggcgcgggctgggcgatcgagatcaatgcggcgacgctgccgcgggtgctggtcaaccgg
gcttattatacggagatcgcgaccgggcatcaggacaagagcagcaaggcctggctttcc
gacatgctcgccagcgccaattggctggtaaaggcactcgaccagcgccagcgtacgatc
atcaaggtggcgagcgagatcgtgaagcagcaggaggcattcttcctgaagggcgtcgcc
cacctcaagccgatgacgttgcgtcaggttgccgacgcgatcgagatgcacgaatcgacc
gtaagccgggtgacgtcgaacaaatatctgagctgcgcgcgcgggctgttcgagctcaaa
tatttcttcaccagcgcgatccagtcggccgatggcggcgacgcggtctcggcgcaggca
gtgaagagcgcgatccgcgcgctcatcactgcggaagatgccaaggcgatcctgtccgac
gacacgctggtcgatctgctgcgggaaaagggattcgacatcgcccgccggacagtggcc
aaatatcgcgaagcattggggatcggcagttcggtgcagcgtcgccgccagaaggcattg
gaaggcgtcgggtaa
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