Sphingomonas sp. M1-B02: OKW87_15715
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Entry
OKW87_15715 CDS
T11063
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OKW87_15715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spmb03019
]
OKW87_15715
Enzymes [BR:
spmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OKW87_15715
Messenger RNA biogenesis [BR:
spmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OKW87_15715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UZK65933
LinkDB
All DBs
Position
complement(3257262..3258707)
Genome browser
AA seq
481 aa
AA seq
DB search
MQFKHLGLSEIVLSALASKGYTEATPIQAQAIPSLLEGRDLLGIAQTGTGKTAAFMLPSI
DRLMASEKRAQPRGCRMLVLAPTRELASQIAESARDYSKGTNLRVMTCFGGTSVHKNKVD
LARGVDILVATPGRLVDLIEQHYAILLGIEILVLDEADQMMDLGFIHALKRIVRELPAKR
QTLFFSATMPKTIRDLATQFIKDPVEVKVTPEATTAERVEQQVTFVTQAEKQSLLTLALR
DPKIDRALIFTRTKHGADRVVKLLSGNGVASNAIHGNKSQPQRERALGEFKSGKVKVLIA
TDIAARGIDVSGVSHVFNFELPNVPDQYVHRIGRTARAGATGIAISYCAEDERPYLRDIE
KLTRQKLTVVPLPADFVNESSKIKSTRSPMPVSRDESNGRNGRAMQHSGRSSSAPRGNAQ
PRREGNSFGDRRPPQAGEQRRSDGPRSDAPRGDAPRNYARPKSKFTARPARPAGTGGGRP
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcaaacatctcggtctctcggagatcgtgctctcggcgctcgcgtccaagggc
tataccgaagccacgccgatccaggcacaggccattccctcgctgctcgaagggcgcgat
ctgctcggcatcgcccagaccggcaccggcaagaccgccgctttcatgctgccctcgatc
gatcgcctgatggcatcggagaagcgcgcccagccgcgcggctgccgcatgctcgttctc
gcccctacccgcgaactcgccagccagatcgccgaaagcgcccgcgattattcgaagggc
accaaccttcgcgtgatgacctgcttcggcggcacgtcggtgcacaagaacaaggtcgat
ctagcccgcggcgtcgacatccttgtcgcaacgccgggtcgcctcgtcgatctgatcgag
cagcattatgcgatcctgctcggcatcgagatcctcgtcctcgacgaagccgatcagatg
atggacctgggcttcatccacgcgctcaagcgcatcgtccgcgagcttccggccaagcgc
cagaccctgttcttctcggcgaccatgcccaagaccatccgcgatctggcgacccagttc
atcaaggatccggtcgaagtgaaggtcacgcccgaggcgacgactgccgagcgcgtcgag
cagcaagtcaccttcgtcacccaggccgagaagcagtcgctgctcacgctggcgctgcgc
gatccgaagattgatcgcgcgttgatcttcacccgcaccaagcacggcgcggatcgcgtc
gtgaagctgctctcgggcaatggcgtcgcctccaatgcgatccacggcaacaagagccag
ccgcagcgtgaacgtgcgctgggcgagttcaagtcgggcaaggtcaaggtgctgatcgcg
accgatatcgccgcgcgcggcatcgacgtctcgggcgtcagccacgtcttcaatttcgaa
ctgcccaacgtgccggatcagtacgttcaccgcatcggtcgcaccgcgcgcgccggcgcc
accggcatcgcgatcagctattgcgccgaggacgagcgtccgtatctgcgcgatatcgag
aagctcacccgccagaagctgaccgtcgtcccgctgccggccgatttcgtcaacgaatcg
tcgaagataaagtcgacccgttcgccgatgccggtcagccgcgacgaatcgaacggccgc
aacggtcgcgcgatgcagcattcgggccgctcgagcagcgccccgcgcggcaatgcgcag
ccgcgccgcgaaggcaattcgttcggcgatcgccgcccgccccaggccggcgagcagcgc
cgctcggacggaccacgctcggatgcgccccgcggcgacgcaccccgcaactatgcgcga
ccgaagagcaagttcaccgcgcgcccggcgcgtccggccggcaccggcggcggtcgtccg
cggtaa
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