Sphingomonas sp. M1-B02: OKW87_15820
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Entry
OKW87_15820 CDS
T11063
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb00550
Peptidoglycan biosynthesis
spmb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
OKW87_15820 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
spmb01002
]
OKW87_15820 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
spmb01011
]
OKW87_15820 (dacB)
Enzymes [BR:
spmb01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
OKW87_15820 (dacB)
Peptidases and inhibitors [BR:
spmb01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
OKW87_15820 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
spmb01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
OKW87_15820 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Motif
Other DBs
NCBI-ProteinID:
UZK65954
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All DBs
Position
3279181..3280605
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AA seq
474 aa
AA seq
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MRRLLFLALVLATPATGQTLQQRVETTLDEAATGTRFGLVVTDADGAEIVAVNPDGRFIP
ASNTKMFTTAAAFATVPGLDQPDVAGGTAVRIEGSNVILEGHGDARLSSADDCAVDCLAT
LADAVAAKTRHVRDVIGDDTLFPDQRWSPGMSWNNIPSRSGTGISALSLDDNELVIRVTP
TVPGEVPTIDALGYYQIENRALTTAAGATALGYDRDPNRRVLKISGTIAVGAPAGTLRVG
IDDPADYAAWRFKALLEARGVRVRGTASARHRALAPGDDPAVRKGAPPARPPVQEALARL
TPPPLAENIVTINKVSQNLHAELLLRRVGLQHGTGSIADGQAQVQAMLEQAGVPRTAYDL
SDGSGMSSYNRAAPRGTVTMLRWIAEQPWGSTWRASLPIGGVDGTLSRRFKGTVLEGKIF
AKTGTLNATNALSGYMIAKSGKELTFSSFANDIPADAGATKFVDAALVLIAEAN
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggttgctgttcctggcgcttgtccttgccacgccggcgacggggcagacgttg
cagcagcgggtggagacgacgctggacgaggcggcgacagggactcgcttcgggctggtg
gtgacggacgccgacggcgcggagatcgtcgcggtgaaccccgatgggcggttcattccg
gcttcgaataccaagatgtttacgactgcggcggcgtttgcgacggtgcccggacttgat
cagcccgatgtcgccgggggcaccgcggtgcggatcgagggttccaacgtcatcctggag
gggcatggcgatgcgcggctttcgagcgcggacgattgcgcggtggattgcctggcgacg
ctggccgatgcggtggcggcgaagacgcggcatgtgcgcgacgtgatcggcgacgacacg
ctgtttcccgaccagcgctggagcccggggatgagctggaacaatatcccgtcgcgatcg
ggcaccggcatttcggcgctgagcctggacgataatgaactggtgatccgggtgacgccg
acggtgccgggcgaggtgccgacgatcgacgctttgggctattaccagatcgaaaaccgc
gcgttgacgaccgcggcgggcgccaccgcgcttggctatgaccgcgatccgaaccggcgc
gtgctgaagatcagcggcacgatcgcggtgggcgctccggcgggcactttgcgggtgggg
atcgacgatccggcggattacgccgcgtggcggttcaaggcgttgctcgaggcgcgcggg
gtgcgggtgcggggcaccgcttcggcgcggcatcgggcgctggcgccgggcgacgatccc
gcggttcgcaagggtgcgccgccggcgcggccgccggtgcaggaagcgctggcacggctg
acgccgccgccgctggctgagaatatcgtgacgatcaataaggtcagccagaatctgcat
gccgagcttttgctgcgccgcgtggggctgcagcatgggacgggatcgatcgccgacggg
caggcgcaggtgcaggcgatgctggagcaagctggggttccgcgaaccgcctatgacctg
tccgacggatcgggcatgtcgagctacaatcgggcggcaccacgcgggacggtgacgatg
ctgcgctggatcgcagagcagccctggggctcgacgtggcgggcaagcctgccgatcggg
ggggtggacgggaccttgtcgcgccggttcaaggggaccgtgctggagggcaagatcttc
gccaagaccgggacgctgaacgcgaccaacgcgctttcgggctatatgatcgcgaagagt
gggaaggaactgaccttctcttcctttgccaacgacattccggcggatgccggggctacc
aagttcgtcgatgctgcgctcgtcctgatcgccgaggcgaattaa
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