Sphingomonas sp. M1-B02: OKW87_16550
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Entry
OKW87_16550 CDS
T11063
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spmb Sphingomonas sp. M1-B02
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spmb03032
]
OKW87_16550
03400 DNA repair and recombination proteins [BR:
spmb03400
]
OKW87_16550
Enzymes [BR:
spmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OKW87_16550
DNA replication proteins [BR:
spmb03032
]
Prokaryotic type
DNA Topoisomerases
OKW87_16550
DNA repair and recombination proteins [BR:
spmb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OKW87_16550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
UZK66095
LinkDB
All DBs
Position
complement(3426175..3427191)
Genome browser
AA seq
338 aa
AA seq
DB search
MTAADIVYVDDHEPGITRRKMRHGWGYFDPQGTRITDRDAIDRLNAVGLPPAYRDAWYCP
DPNGHIQATAKDDKGRKQYRYHVGFREAQEAAKYDRCAGFGEALPLLRSKVEHDLKLRGL
CKSKAVAAVVRLLDLGTIRVGNESYAQANKSFGATTLRKRHVQVKGNSLRLQFRAKSGKM
RLMTITDGSLSRFVKRCQDLPGQHLFRWIDDAGEAHPVTSTDVNCYIREAMKQDFTAKHF
RTWGASVLAFEALAGADSYMGIKSMLEPVTEALGNTPSIARKSYVHPRLIDLAKDREAQA
AFRAGLRLPRSTRYLTRFERGLIAFLEEAADAPQAKAA
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgacagctgccgacatcgtctatgtcgacgatcacgaacccggaatcacccggcgcaag
atgcgccacggttggggctatttcgatccgcaggggacacgcatcaccgatcgcgacgcg
atcgaccggctcaacgccgtcggccttccccccgcctatcgcgacgcctggtattgcccc
gatcccaacggccacatccaggccacggccaaggacgacaagggccgcaagcaatatcgc
tatcatgtcggcttccgcgaggcgcaggaggcggcgaaatatgatcgttgcgccggcttc
ggcgaggcgctgccgctgcttcgctccaaggtcgagcatgacctcaagctgcgcggcctg
tgcaagtccaaggccgtcgccgcggtcgtccgcctgctcgatctcggcacgatccgcgtc
gggaacgagagctatgcccaggcgaacaagagcttcggcgcgaccacgttgcgcaagcgc
cacgtccaggtgaagggcaacagcctgcgcctccagttccgcgccaaatcgggcaagatg
cggctgatgacgatcaccgacggcagtctcagccgcttcgtcaagcgctgccaggatctg
cccggccagcatctgtttcgctggatcgacgatgcgggcgaggcgcaccccgtcacctcc
accgacgtcaattgctatatccgcgaggcgatgaagcaggatttcacggccaagcatttc
cgcacctggggcgcgagcgtgctcgccttcgaggcgctggccggcgccgactcctacatg
ggcatcaagtcgatgctcgagccggtgaccgaggcgctgggcaacaccccctcgatcgcg
cgcaaatcctatgtccacccacggctgatcgacctcgccaaggatcgcgaggcgcaggcc
gcgttccgcgccgggttgcggctgccccgctcgacccgctatttgacccgctttgaacgc
ggattgatcgccttcctcgaggaagcggcggacgcgccccaagccaaggcagcctga
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