Sphingobium sp. MI1205: K663_03975
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Entry
K663_03975 CDS
T04383
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spmi
Sphingobium sp. MI1205
Pathway
spmi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spmi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K663_03975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spmi03021
]
K663_03975
03400 DNA repair and recombination proteins [BR:
spmi03400
]
K663_03975
Enzymes [BR:
spmi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K663_03975
Transcription machinery [BR:
spmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K663_03975
DNA repair and recombination proteins [BR:
spmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K663_03975
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AMK17180
LinkDB
All DBs
Position
1:complement(835546..839802)
Genome browser
AA seq
1418 aa
AA seq
DB search
MNELTNFANPVQKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLNEDELLDAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGEKQALLDELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMEREGEPGEGMLLSDMQEVHQALFA
KAVTLHSKIISRVPQTDEAGNQYMKRFETTPGRMLLGECLPKSHKVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRHAFQAGISFGKDDMVIPDSKEGTVAETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDVVANAMMDEIRAQPKDPQTGRLAQINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCTIVEEDCGTDKALEMKAIVQGGSVIASLGERILGRTT
AQDIVDSKDGTIIVPIGTLLDEALVAQIEAIGTQSVKIRSPLICESRMGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLEALSDGTIELRDMPT
IMDKNGRRLSLARNGEIAIIDNEGRERETHRLPYGATILFADGDTVKKGERFAEWDPFTM
PVITEKPGIVKYQDLIDGKTLTEQTDEATGIAQRVVTEHRGSARTKEDLRPRLTLLDDES
GEAARYMLAVGATLSVDDGAQVQAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKVSGRVQFLKDYKAKRKIAINPEDGSEPVEYLIPKSKVIDVQEGDFVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEIIESGDTT
LLVGEQVDREEMDEINAKLPAGYQPAAGKPVLLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRMRVAASSRDAAMRAALRASSQVDLIAP
KTAAAEHAAELAQGPEAAIGDDPLGVVQGEDFTTQDLD
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaacttcgccaatccggtccagaagccggaaaccttcgaccagatc
cagatcggccttgcctctccggagcgcatccgcagctggtccttcggtgagatcaagaag
ccggaaaccatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgcgcgc
attttcggtccgatcaaggactatgaatgcctgtgcggcaagtacaagcgcatgaaatat
aagggcatcgtctgcgaaaagtgcggtgtcgaagtcacggtgtcgaaggtccgccgcgag
cgcatgggccatatcgaactggccgcgcccgtcgcgcatatctggttcctgaagtcgctg
ccctcgcgcatcggcctgctgctcgacatgcagttgaagcagcttgagcgcgtcctttac
ttcgaaagctacatcgtcaccgagccgggcctgaccccgcttgagaagttccagcttctg
aacgaagacgaactgctcgacgcgcaggacgaatatggcgaggacgccttctccgcgggg
atcggcgcggaagcggtcaagcaaatgctcatggatctcgaccttgagggcgagaagcag
gcgctgctggacgagctggccgtcaccaagtcggaactgaagcccaagaagatcatcaag
cgcctgaaggtggttgagagcttcctggaatcgggtaaccgccccgaatggatgatcctg
gacgtcgtgccggtcatcccgccagaactgcgcccgctggtgccgctggacggcggccgt
ttcgcgacgtcggacctcaacgacctgtatcgccgcgtcatcaaccgcaacaaccgcctg
aagcgcctgatggagctgcgtgcgccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaagccgttgacgccctgttcgacaatggccgccgtggccgcgtcatcaccggcgcg
aacaagcgtccgctgaaatcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgattattcgggccgttcggtcatcgtgaccgggccg
gaactcaagctgcatcagtgcggcctgcccaagaagatggcgctcgaactgttcaagccg
ttcatctacgcccgcctcgacgccaagggtctgtccatgaccttgaagcaggcgaagaag
tgggtcgaaaaggagcgcaaggaagtctgggacatcctggacgaggtgatccgcgagcat
ccggtgatgctgaaccgcgcgcccacgctccaccgtcttggcatccaggcattcgagccc
gtgctgatcgaaggcaaggcgatccagttgcacccgctcgtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgttccgctgagccttgaagcccagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctgtcgcccgcgaacggcaagccgatc
atcgttccgtcgcaggacatggttctgggcatctattacctgtctatggagcgcgaaggc
gagccgggcgaaggcatgctgctttcggacatgcaggaggtccaccaggccctctttgcc
aaggccgtcacgctgcactcgaagatcatcagccgcgtgccgcagaccgacgaagccggc
aatcagtatatgaagcgcttcgaaacgacgccgggccgcatgctgctgggcgaatgtctg
cccaagagccacaaggtgcccttcgacgtcgtcaaccgccttctcaccaagaaggaaatc
ggtgacgtcatcgaccaggtctatcgtcacacgggtcagaaggacacggtgctgttcgcc
gacgccatcatggcgctgggcttccgccacgcgttccaggccggcatttcgttcggcaag
gacgacatggtgatcccggactcgaaggaaggcactgtcgctgagacgaaggcgctggtg
gccgactatgagcagcaatatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtcatcgacgcctggagccgttgcggcgacgtggtggcgaacgccatgatggacgaaatc
cgcgcccagcccaaggacccgcagaccggccgcctcgcgcagatcaactcgatctacatg
atggcgcactcgggcgcccgtggttcgcaggcccagatgaagcagcttgccggcatgcgc
ggcctgatggccaagccttcgggcgagatcatcgaaacgccgatcatctcgaacttcaag
gaagggctgaccgtccttgaatatttcaactccacccacggcgctcgcaagggtctggcc
gacaccgcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgatgtcagc
caggactgcaccatcgtcgaggaggattgcggcaccgacaaggcgctggagatgaaggcc
atcgtccagggcggttccgtcatcgcctcgctcggcgagcgtatcctgggccgcaccacg
gcgcaggacatcgtcgacagcaaggacggcaccatcatcgtgccgatcggcacgctgctg
gacgaagcgctggtggcgcagatcgaagccatcggtacgcagtccgtgaagatccgctcg
cctctcatctgcgaaagcaggatgggcgtctgcggcaagtgctacggccgtgacctcgcc
cgtggtacgccggtcaatatcggtgaagcggtcggtgtcatcgcggcgcagtccatcggt
gaaccgggtacgcagcttaccatgcgtaccttccacatcggcggcgcggcgaacttcaac
gaaacgtcgaacctggaagccctgtcggacggcacgatcgaactgcgcgacatgccgacc
atcatggacaagaatggccgtcgcctgtcgctcgcccgcaacggcgagatcgcgatcatc
gacaatgaaggccgtgaacgcgaaacgcaccgcctgccttacggcgccaccatcctgttc
gcggatggcgacaccgtgaagaagggtgagcgcttcgccgaatgggatcccttcaccatg
ccggtgatcaccgaaaagccgggcatcgtgaagtatcaggacctgatcgacggcaagacg
ctgaccgaacagaccgacgaagcgacgggcatcgcccagcgcgtcgtcaccgagcatcgc
ggttccgcccgtacgaaggaggatctgcgtccccgcctcaccctgctcgacgacgagtcg
ggcgaagctgcccgctacatgctggcggtgggtgcgaccctgtcggtcgatgacggtgcg
caggttcaggccggtgacgtgctggcgcgtgtcagccgcgaagcggccaagacccgcgac
atcaccggcggtctgccgcgcgtcgccgaactgttcgaagcccgcaaacccaaggacaat
gcaatcattgccaaggtgtcgggccgcgtgcagttcctcaaggattacaaggcgaagcgc
aagatcgccatcaatcccgaggatggcagcgagccggttgagtatctgatccccaagagc
aaggtgatcgacgttcaggaaggcgacttcgtgaagcgcggcgacaacctgatcggtggt
tcgcctgatccgcatgacattctggaagtgctcggcatcgagccgctggcagaatatctg
gtagcggaaatccaggaagtctatcgcttgcagggcgtgaagatcaacgacaagcacatc
gaaacgatcgttcgtcagatgctgcaaaaggtcgagatcatcgagtccggcgacaccacg
ctgctggtgggcgaacaggtcgatcgcgaggaaatggacgagatcaacgccaagcttccg
gccggttaccaacccgccgcaggcaagccggtgctgctcggcattaccaaggcttcgctg
cagacgcgctcgttcatctcggccgcatctttccaggaaacgacccgcgttctcacggaa
gcggccgttcagggcaagaaggacacgctggttggcctgaaggaaaatgtcatcgtcggc
cgcctcatcccggcgggcacgggtgctggcatgaaccgcatgcgcgttgccgcctcgtcg
cgtgacgcggcgatgcgggccgcgctgcgcgcctccagccaggttgacctgatcgcgccc
aagaccgctgccgccgagcatgccgccgaactggcgcagggcccggaagcagcgatcggc
gacgatccgctgggcgtggttcagggtgaagacttcaccacccaggacctcgactga
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integrated database retrieval system
