Sphingobium sp. MI1205: K663_05690
Help
Entry
K663_05690 CDS
T04383
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spmi
Sphingobium sp. MI1205
Pathway
spmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K663_05690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spmi03019
]
K663_05690
03016 Transfer RNA biogenesis [BR:
spmi03016
]
K663_05690
Enzymes [BR:
spmi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K663_05690
Messenger RNA biogenesis [BR:
spmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K663_05690
Transfer RNA biogenesis [BR:
spmi03016
]
Prokaryotic type
tRNA degradation factors
K663_05690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
BioW
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AMK17523
LinkDB
All DBs
Position
1:1186706..1189036
Genome browser
AA seq
776 aa
AA seq
DB search
MFDVKKVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLTSRLIDRPIRPLFPEGFYNEINVIAQVLSF
DGESEPDIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSMDEVKEGELDLVVA
ATGNAVMMVESEAKELSEDIMLGAVLFAHEASKKVVDAIIQLAEKAAKDPWEVAKGDDLD
DLKKKLKKLIGKDITAAYKLSDKSARSNAINAARDKAKAFFAEEGLDAQTVMAGIKLTKK
LEAEIVRGAIIKDGKRIDGRTTTQIRPIEAIVGFLPRTHGSALFTRGETQAICTTTLGTK
DAEQMIDGLNGVYYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKD
EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILDGKDFAVLS
DILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMNK
ALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS
SDIDQIEAAKKWILGIVEEAEVGKVYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV
EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPAREPREPRGDRGDR
GDRGRGPRRDGGDRGGRGGDRGGDRGPRRDRGPRTEGKGGDDDGSNAGLPDFLTQD
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatgtaaagaaagtatcaatcgagctgggcggcaagaccctcacgctcgaaacc
ggtcgtattgcgcgtcaggccgacgccgccgtgctggcgacctatggcgagaccgtggtg
ctgtgcgccgtgactgccgccaagtcggtgaaggaaggacaggacttcttcccgctgacc
gtccattatcaggaaaaatattccgccgccggacgcattcccggtggttttttcaagcgt
gagcgtggcgcgaccgagaaggaaacgctgaccagccgcctgatcgaccgtccgatccgt
ccgctgttcccggaaggtttctataacgaaatcaacgtcatcgctcaggttctgagcttc
gacggcgagagcgagcccgacatcgtggcgatgatcgccgcgtcggctgcgctgaccctg
tcgggcgtgcccttcatgggcccgatcggcgccgcgcgagtcggttacaaggatggcgag
tatcagctgaacccgtcgatggacgaggtgaaggaaggcgaactcgacctggtggtcgcc
gccaccggcaatgcggtgatgatggtcgaatccgaagccaaggagctttcggaagacatc
atgctgggcgccgtcctgtttgcccatgaagcaagcaagaaggttgtcgacgcgatcatc
cagctggccgaaaaggccgcgaaggatccgtgggaagtcgccaagggcgacgatctggat
gacctcaagaaaaagctgaagaagctgatcggcaaggacatcacggccgcttacaagctg
tctgacaagtcggcgcgttcgaacgcgatcaacgccgctcgcgacaaggcgaaggcgttc
ttcgccgaggaaggcctggacgcccagaccgtcatggccggcatcaagctgaccaagaag
ctggaagccgaaatcgttcgcggcgccatcatcaaggatggcaagcgcatcgacggccgc
accaccacgcagatccgtccgatcgaggcgatcgtcggcttcctgccgcgcacccatggt
tcggcgctgttcacccgcggtgaaacgcaggcgatctgcaccaccacgctgggcaccaag
gacgccgagcagatgatcgacggcctgaacggcgtctattatgaaaacttcatgctgcac
tataacttcccgccttattcggtcggtgaagtcggccgcttcggcgcgccgggccgtcgt
gaagtcggtcatggcaagctggcatggcgtgcgctgcaccccgtgctgcccagcaaggac
gagttcccctacaccatccgcgtcctgtccgacatcaccgagtccaacggctcgtcgtcg
atggcaactgtttgcggcggttcgctgtcgatgatggatgcgggcgttccgttgaagcgt
ccggtgtcgggcatcgccatgggcctgatcctcgacggcaaggatttcgctgttctgagc
gacattctgggcgacgaagatcaccttggcgacatggacttcaaggtggcgggcacggaa
gcgggcatcaccaccatgcagatggacatcaaggttgccggcatcacgcaggaaatcttc
gaagtcgccctgcgtcaggcgaaggaaggccgcgcccacattctgggtgaaatgaacaag
gcgctgtcctcgacccgcaccgaactgtcggcgcacgctccccgcatcgagacgatccag
atcgacaagtcgaagatccgtgacgtcatcggcacgggcggcaaggtgatccgcgagatc
gtcgcggaaaccggcgccaaggtcgatatcgacgacgagggcatcatcaagatcagctcg
tccgacatcgaccagatcgaagccgccaagaagtggatcctcggcatcgtcgaggaagcg
gaagtcggcaaggtctataccggcaaggtcgtcaacatcgtcgatttcggtgcgttcgtg
aacttcatgggcggcaaggacggtctcgtccacgtgtccgaaatgaagaatgagcgcgtc
gaaaagccgaccgacgtcgtgtcggaaggccaggaagtgaaggtcaaggttctcgagatc
gacccgcgcggcaaggttcgcctgtcgatgcgcgtcgttgaccaggaaaccggcgaagag
ctggaggacacccgtcctgcgcgcgaaccgcgtgagccccgtggtgatcgcggcgatcgt
ggcgaccgtggtcgtggcccgcgtcgcgacggcggtgatcgtggcggccgtggtggtgat
cggggcggcgatcgtggcccgcgccgcgaccgtggtccgcgcacggaaggcaagggtgga
gacgatgacggctccaacgccggtctgcccgacttcctgacgcaggactga
DBGET
integrated database retrieval system
