Sphingobium sp. MI1205: K663_06850
Help
Entry
K663_06850 CDS
T04383
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
spmi
Sphingobium sp. MI1205
Pathway
spmi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spmi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K663_06850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spmi03021
]
K663_06850
Transcription machinery [BR:
spmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K663_06850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AMK17751
UniProt:
A0A126R655
LinkDB
All DBs
Position
1:complement(1427269..1429317)
Genome browser
AA seq
682 aa
AA seq
DB search
MASKATGKGAGEDVDTGDAPLLDLNEASVKKLIARAKKRGYITYDELNDALPQDQMSSEQ
IEDIMAALNEMGVNIVENEEASEDGDEQREREDAEDAEDDSGDDDGAPKLVTEKKKETVD
RTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPTTFNAIIEWSTALN
NGEMQLREILDLDAMLSKDPAPENLEEGAEDDDGEISEKTAGPSFKEEEEPEEESADSDE
EEDGLTERRARRVEEEEEEDNTLSLAQMEETLKPMALEKFATITEIFRTFSRAQESRMTA
MANGESLSQKAEDDYQELREQLTAEVESVQFHQQKIEYLVDQLYAYNRRLTALGGQMLRL
AERHKVSRKDFLDRYVNHELDDGWMDRVSGIDKKWAAFAAAEGRAVDRIRAEVSEIAQAT
GMSLGEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG
LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFL
HEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIP
VDAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIE
AKALRKLKHPSRSRKMRSFLDQ
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaaggcgacaggcaagggtgcgggcgaggatgtggataccggcgatgcgccg
cttcttgatctgaacgaggcgtcagtcaagaaactgatcgcgcgcgccaagaagcgcggg
tacatcacttatgacgagctgaacgatgccctgccgcaggatcagatgtcctccgagcag
atcgaggacatcatggccgcgctcaacgaaatgggcgtgaacatcgtcgagaatgaagaa
gccagcgaagacggcgacgaacagcgcgagcgcgaggatgccgaagacgccgaggacgat
tcgggtgacgatgacggcgcgcctaaacttgtcacggaaaagaagaaggaaaccgtagat
cgcaccgacgacccggtgcgcatgtatctgcgcgagatgggcgccgtcgaactgctcagc
cgcgaaggcgaaatcgcaatcgccaagcggatcgaagcgggtcgcgacacgatgatcctg
ggcctctgtgaaagcccgacgaccttcaacgccatcatcgaatggtcgaccgcactcaac
aatggcgaaatgcagctgcgcgagatcctggatctcgacgccatgctgtccaaagatcct
gcccccgagaatctggaggaaggcgccgaggacgacgacggcgagatcagcgagaagacc
gcaggccccagcttcaaggaagaggaggagcccgaggaggagtcggctgactccgacgag
gaggaagacggcctgaccgagcgtcgcgcccgtcgcgtggaagaggaagaggaggaagac
aacaccctctcgctcgcccagatggaagaaactctcaagccgatggcgctggagaaattc
gcgaccatcactgagattttccgcaccttctcccgtgcccaggagtcgcggatgaccgcc
atggccaatggcgagagcctgagccagaaggcggaggacgactatcaggaactgcgcgag
cagctgacggcagaggtggaaagcgtccagttccatcagcagaagatcgaatatctggtt
gatcagctttatgcctataatcggcgcctgactgcgctcggcgggcagatgctgcgcctg
gccgaacggcacaaggtgagccgcaaggacttcctcgatcgctatgtgaaccacgagctg
gatgacggctggatggatcgtgtgtcggggatcgacaagaaatgggcggccttcgctgcg
gcggaaggacgcgctgtcgatcgcatccgcgctgaagtgagcgaaatcgcgcaagcaacg
ggtatgtcgctcggcgaattccgccgcatcgtcaacatggtgcagaagggcgagcgcgaa
gcacgtatcgcgaaaaaggaaatggtggaggcaaacctgcgtctcgtcatctccatcgct
aaaaaatataccaaccgcggcctgcaattccttgatctcattcaagaagggaatatcggc
ctcatgaaggctgtcgataagttcgaatatcggcgcggctacaaattctcgacctatgcg
acctggtggatccgtcaggcgatcacccgctcgatcgcggaccaggcacggacgatccgt
attccggtccacatgatcgagacgatcaacaagcttgtccgcaccagccggcagttcctg
catgaacagggccgcgaaccgacgccggaggaaatggcggagcgcctttccatgccgctg
gagaaggtgcgcaaggtgatgaagatcgccaaggagccgatctccctcgaaacgccgatc
ggcgatgaggaggattcgcacctgggcgatttcatcgaggacaagaatgcgatcatcccc
gtggatgccgcgattcaggcgaacctcaaggagaccgtgacgcgcgtcttggcgtcgttg
acgccgcgcgaggaacgcgtcctgcgcatgcgcttcggcatcggcatgaacaccgatcat
accctggaggaagtcggtcagcagttcagcgtgacacgcgaacgtattcgtcagatcgaa
gcaaaggcgctgcggaagctgaagcaccccagccgcagccggaagatgcgcagcttcctc
gaccaataa
DBGET
integrated database retrieval system
