Sphingobium sp. MI1205: K663_09745
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Entry
K663_09745 CDS
T04383
Name
(GenBank) putative helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spmi
Sphingobium sp. MI1205
Pathway
spmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K663_09745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spmi03019
]
K663_09745
Enzymes [BR:
spmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K663_09745
Messenger RNA biogenesis [BR:
spmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K663_09745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AMK18327
LinkDB
All DBs
Position
1:complement(2033599..2034978)
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AA seq
459 aa
AA seq
DB search
MQFTDLGLAEPILKALAAKNYASPTPIQTQAIPVLLQGKDLCGIAQTGTGKTAAFALPSL
DHFARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFMKLSIEVVFGGVPINRQIRA
LGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDR
QNLFFSATMPSEIESLAAQFLNNPVKVSVAPQATTAERVRQQATFVNQVEKQALLTLTVK
NEPIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVA
TDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDEKPYLKAIE
RTTRIKLDIVPLPENFVEAVRNLPKAAPQRKGREQTSEQKAKRVEGQRRYQDDQRQQRGT
AERAHRPDGDAAKPAKKNFRRGRSGVGAHKGAVQKVGGR
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcaccgaccttggtctcgccgagcccatcctgaaggcgctcgccgccaagaat
tatgcttcccccacgccgatccagacgcaggccattccggtcctgctgcagggcaaggat
ctgtgcggcatcgcgcagaccggcaccggcaagacggccgccttcgcgctgcccagcctg
gatcacttcgcccgcaatcccaagccgaccccgctccagggctgccgcatgctcgtcctg
tcgccgacccgcgaactggcggcgcagatcgcgcagagcttccgcgactatggtcgcttc
atgaagctttccatcgaagtcgtcttcggcggcgtgccgatcaaccgccagattcgggcg
ctgggccggggcgtcgatatcgttgtcgccacgcccggccgcctgctcgacctgatcgac
cagcgcgccttcaccatcaaggatacggaaatcttcgtcctcgacgaagccgatcagatg
atggacatgggcttcatccacccgctcaagcgcatcgccaagctgttgcccagggatcgg
cagaacctgttcttctccgccaccatgccaagcgagatcgaatcgttggccgcgcagttc
ctgaacaatcccgtgaaggtcagcgtcgctccccaggccaccacggccgaacgggtccgc
cagcaggcgactttcgtcaaccaggtggaaaaacaggcgctcctcacgctgaccgtgaaa
aatgagccgattgaccgcgccctgatcttcacccgcaccaagcatggcgcggaccgggtc
gtgcgctttctggaaggcgccggcatccaggctgtcgcgatccacggcaacaagagccag
gcccagcgcaccaccgcgcttcaggcgttccgtcacggccatgtgaagctgttggtggcg
accgacatcgccgcgcgcggaatcgacgtttccggcgtcagccatgtcatcaatttcgag
ctgcccaacgttcccgaacaatatgtccatcgcatcggccgtactgcccgcgcgggggcg
gagggcgtggcgatcagtttcgtcgccgatgatgagaagccctatctgaaagctatcgag
cggaccacgcggatcaagctcgacatcgtgccgctgcccgagaatttcgtggaagcggtc
cgcaatctccccaaggccgcgccccagcgcaaggggcgcgaacagacgtccgaacagaag
gcgaagcgcgtcgagggtcagcgccgctatcaggacgatcagaggcaacagcgcggtacc
gctgaaagggcgcatcgtcccgacggagacgccgccaagcctgccaagaaaaacttccgg
cgtggtcgcagcggtgtcggcgcgcataagggcgcggtgcaaaaggtcggcgggcggtaa
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