Sphingobium sp. MI1205: K663_10850
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Entry
K663_10850 CDS
T04383
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spmi
Sphingobium sp. MI1205
Pathway
spmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K663_10850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spmi03019
]
K663_10850
Messenger RNA biogenesis [BR:
spmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K663_10850
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF6833
Motif
Other DBs
NCBI-ProteinID:
AMK18549
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All DBs
Position
1:complement(2254583..2256220)
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AA seq
545 aa
AA seq
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MTPGNELLFLALGGSGEIGMNVNLYGCQGKWVMVDLGLTFADPAYPGVELILPDLSFIEE
RREDLLGIVLTHGHEDHIGAIPYLAADLGVPLYATPFTAGLIRLKLEEEGLSREVKLHVI
ENEGSFALGPFGFRYVPLAHSIPEGNAVLIDTPHGRIFHTGDWKLDEKPLLGQPSTPAEL
TAIGDEGVLALVCDSTNVFNAEASGSEGDVREGLMATITGAKGRVLVTTFASNAARLQTL
GEVANAVGRKLCVAGRSLDRIISTAKAAGYLKDFPPTVDWDDAMALPRNEVMIIATGGQG
EARAALSRIAFESHPIKLDTGDLVVFSSKQIPGNEIAIGRIQNALATKGVLMVTDRQAAV
HVSGHPGRPELEAMYSWVRPQILLPVHGERRHMAEQARLGLTNGVPHAVVQSNGDLLRLA
PNGPEIIGKEGTGRLVLDGDVILPADGSTMNERRKIALHGQISVAVALDRKGKLIGEPAL
RTQGVPVEEDKAAFLAEAADEAAQVVPKGSQDEEALRERVRLAVRRTATRWTGKKPVVDV
LLVRA
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgacacccggaaacgagctgctcttcctggcccttggtgggtcgggcgagattggcatg
aacgtaaatctctatggctgccagggtaagtgggtgatggtcgatctgggcctgaccttt
gccgatccggcctatcccggtgtcgagctgatattgccggacctgtccttcatcgaggag
cggcgcgaggatttgctcggcatcgtgctgacgcacgggcatgaggatcatatcggggcg
atcccctatctggccgccgatctgggcgtgccgctttatgcgacgcccttcaccgcgggg
ctgatccggctgaagctggaagaagaagggctgagccgtgaggtgaagctgcacgtgatc
gagaatgagggcagctttgccctgggtccattcggtttccgctatgtgccgctggcgcat
tcgatcccggagggcaatgcggtgctgatcgacacgccccatggccgcatttttcacacc
ggcgactggaagctggatgaaaagccgctgctgggccagccttcgacccctgcggaactg
acggcgatcggcgacgagggcgtgctggcgctggtgtgcgacagcaccaatgtcttcaac
gcagaggcgagcgggtccgaaggcgatgtgcgcgaagggttgatggcgacgatcaccggg
gcgaagggccgggtgcttgtcaccacctttgcgtccaacgccgcgcgattgcagacgctg
ggcgaggtggcgaacgcggttggacgcaagctgtgcgtggccgggcgctcgctggaccgg
atcatttcgacggccaaggcggcgggttatctgaaggactttccgccgacggtggattgg
gacgatgctatggctttgccgcgcaacgaggtgatgatcatcgccacgggcgggcagggc
gaagcgcgcgcggcattgtcgcggatcgcgttcgaaagccatcccatcaagctggacacg
ggcgatctggtcgttttttcgtccaagcagatcccaggcaatgagattgcgatcggccgc
atccagaacgcattggcgaccaagggcgtgctgatggtcacagaccgccaggcggcagtg
catgtgtcaggccaccctgggcggcctgaactggaggcgatgtatagctgggtacggccg
cagatacttctgcccgtgcatggcgaacgccggcacatggcggaacaggcgcggctgggt
ttgacgaacggcgtcccgcatgcggtggtgcagtccaatggcgacctgctgcggctggcg
ccgaacggcccggagatcatcggcaaggaagggaccgggcggctggtgctggacggcgat
gtcatcctgcccgctgacggatcgaccatgaacgagcggcgcaagatcgcgctgcacggg
cagatcagcgtcgcggtggcgctggatcgcaagggcaagctgatcggcgagccggctttg
cggacgcagggcgtgccggtcgaggaagacaaggccgctttcctggcggaggcggctgac
gaagcagcgcaggtggtgcccaaggggtcgcaggacgaagaagcactgcgcgagcgggtg
cggctggccgtgcggcggacggcgacccgctggacgggcaagaagccggtggtggacgtc
ctgctcgttcgcgcctaa
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