Sphingomonas sp. MS122: ACO227_08090
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Entry
ACO227_08090 CDS
T11466
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
spms Sphingomonas sp. MS122
Pathway
spms02020
Two-component system
spms02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spms00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACO227_08090 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACO227_08090 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spms03021
]
ACO227_08090 (rpoN)
Transcription machinery [BR:
spms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACO227_08090 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Sigma70_r4
Rv2175c_wHTH
HMA_PCA1
SYS1_N
Motif
Other DBs
NCBI-ProteinID:
XRE11794
LinkDB
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Position
1675588..1677090
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AA seq
500 aa
AA seq
DB search
MSLAPRLDLRQSQSLVMTPQLQQAIKLLALSNLEIETFIAEEIEKNPLLDAGAGEEREPA
DAPEPEPPVEREGPADSAELLDAGAATGEASLDVDFATETFHHDSPSDSIGGLDGALGLA
GTGAGGSGEDGLDFDSFAAPDLSLADHLLEQAGAVVDGADLFIAQHLIDQIDEAGYLTVS
LLDVATRLGVPLARVEHVLAIIQTFDPTGVGARDLAECIALQAKEADRYDPCMAALIANL
DLLARGELARLKRICGVDDEDMADMIRELRGYDPKPGCRFGGDPVPAVTPDIFVAPRGQG
WAVELNSATLPRVLVNRAYYAEVSAGPQDKSSKAWLSDMLASANWLVKALDQRQRTIIKV
ASEIVKQQEAFFRHGVSHLKPLTLRQIADAIEMHESTVSRVTSNKYLSCARGLFELKYFF
TSAIQSADGGDAVSAEAVKSAIRALIQAEDPRKILSDDTLVEMLNSKGFDIARRTVAKYR
EAMGIGSSVQRRRQKALEGA
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcgccccgcgcctcgatctgcggcagtcccaatcgctggtgatgacgccgcag
ctgcagcaggcgatcaagctgctggcgctatccaatctcgagatcgagaccttcatcgcc
gaggagatcgagaagaacccgctgctcgacgccggcgccggcgaggagcgcgagccggcc
gacgcgcccgagcccgagccgccggtcgagcgcgaagggccggcggactccgccgaactg
ctcgatgccggcgcggcgaccggcgaggcctcgctcgacgtcgatttcgccaccgagacc
ttccaccacgacagcccgtcggattcgatcggcggcctcgacggtgccctggggctggcc
ggcaccggagccggcggcagcggcgaggacggactggacttcgacagcttcgcggcgccc
gacctcagcctcgccgaccatctgctcgaacaggccggtgctgtggtcgacggcgcggac
ctgttcatcgcccagcacctgatcgaccagatcgacgaggccggttacctcaccgtctca
ctgctcgacgtcgccacccggctcggcgtgccgctcgcgcgggtcgagcatgtgctggcg
atcatccagaccttcgatcccaccggcgtcggcgcgcgcgacctcgccgaatgcatcgcg
ctccaggcgaaggaagccgaccgctacgacccgtgcatggcggcgctgatcgccaatctc
gatctgctcgcacgcggcgagctggcgcgcctcaagcgcatctgcggggtcgacgacgag
gacatggcggacatgatccgcgagttgcgcggctatgatcccaagccgggctgccgcttc
ggcggcgatccggtacccgcagtcacccccgacatcttcgtcgcgccgcgcgggcagggc
tgggccgtggaactcaacagcgcgaccttgccccgcgtgctggtcaaccgggcctattat
gccgaggtctcggccgggccgcaggacaagtcgagcaaggcgtggctcagcgacatgctc
gccagcgccaactggctggtcaaggccctcgatcagcgccaacgcacgatcatcaaggtg
gcgtcggagatcgtgaagcagcaggaagccttcttccgccacggcgtgagccatctgaag
ccgctgacgctgcgccagatcgccgacgcgatcgagatgcacgaatcgaccgtcagccgc
gtgacctcgaacaaatacctgtcctgcgcgcgcgggctgttcgagctgaagtatttcttc
acttcggcgatccagtcggccgatggcggcgacgcggtctcggccgaggcggtcaagagc
gcgatccgcgcgctgattcaggccgaggatccgcgcaagatcctgtcggacgacacgctg
gtcgagatgctcaactcgaagggcttcgacatcgcccggcgcaccgtcgccaaatatcgc
gaggcgatggggatcggcagctcggtccagcgccgacggcagaaggcgctggagggggcc
tga
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