Sphingomonas sp. NIBR02145: O3305_00955
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Entry
O3305_00955 CDS
T10953
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spnb Sphingomonas sp. NIBR02145
Pathway
spnb03018
RNA degradation
Brite
Enzymes [BR:
spnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O3305_00955
Messenger RNA biogenesis [BR:
spnb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O3305_00955
Ribosome biogenesis [BR:
spnb03009
]
Prokaryotic type
rRNA helicases
O3305_00955
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Gene cluster
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Other DBs
NCBI-ProteinID:
WHU03213
LinkDB
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Position
complement(215299..217029)
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AA seq
576 aa
AA seq
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MSFADLPALLAEALAARGYAAPTAVQAAVIEPEAAGRDLIVSAQTGSGKTVAFGLAMHPE
LLGEDGRIIPTREPHALIIAPTRELALQVSRELIWLYGPTGARIATCVGGMDAAKERRQL
SYGAHIVVGTPGRLRDHLERGALDLTALRAVVLDEADEMLDMGFRDDLEAILDGAPDTRR
TLLFSATMPKPIVALAKRYQNDALRISTVGEDRGHGDISYQAVTVSPSDIEHAVINLLRF
HEAETAILFCATRDNVRHLHATLVERGFSAVALSGEHSQNERNHALQALRDQRARVCVAT
DVAARGIDLPTLTLVIHVELPRDAETLQHRSGRTGRAGKKGTAVLIVPYQRRRRVESMLK
GARIPVEWTEVPSPEAIRAQDRERLIAALLAPVEIDEEDAAIAERLLAERTPAEIAAALV
RAHRAAMPAPEELSSQGDRREERQAGQHRPGFDDVAWFRMDIGRRQNADPRWVLPLICRR
GHITKNEVGAIRIGPNETAFQIPRALASKFMAAVARTAEGDEDVRIEASDAPPAQGARPQ
RNGPNRPAGGPGGTGAPRHQPRPYRKAPPARGPSHR
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgccgatctccctgcgcttctcgccgaagcgctcgcagcgcgtggttatgcc
gcgcccaccgccgtccaggccgccgtcatcgaaccggaagccgccggccgcgacctcatc
gtctccgcccagacgggctcgggcaagaccgtggccttcggcctcgccatgcaccccgag
ctgctcggcgaggatggccgcatcatcccgacgcgggagccgcacgcgctgatcatcgcc
cccacccgtgagctggcgctccaggtgagccgcgagctgatctggctctatggccccacc
ggtgcgcgcatcgccacctgcgtcggcggcatggacgccgccaaggaacgccgccagctc
agctacggcgcgcacatcgtcgtcggcaccccggggcgcctgcgcgaccatctcgagcgc
ggcgcgctcgacctcaccgcgctgcgcgccgtcgtcctcgacgaggccgacgagatgctc
gacatgggcttccgcgacgatctcgaggcgatcctcgatggcgcgcccgacacccgccgc
accctgctcttctcggcgaccatgcccaagccgatcgtggcgctggccaagcgctaccag
aacgacgcgctgcgcatctcgaccgtcggcgaggatcgtggccacggcgacatcagctat
caggcggtcaccgtcagcccgtcggacatcgagcatgcggtgatcaacctgctgcgcttc
cacgaagcggagacggcgatcctgttctgcgcgacgcgcgacaatgtccgccacctgcac
gccacgctggtcgagcgcggcttctccgccgtggcgctgtcgggcgagcatagccagaac
gagcgcaaccatgcgctccaggcgctgcgcgatcagcgtgcccgggtctgcgtcgccacc
gacgtcgccgcgcgcggcatcgacctgccgacgctaacgctggtgatccacgtcgagctg
ccgcgcgatgccgagacgctccagcaccgctcgggccgcaccggccgtgccggcaagaag
ggcactgcggtgctcatcgtcccctatcagcgccgccgccgcgtcgaatcgatgctcaag
ggcgcccgcatcccggtcgagtggaccgaggtgccgagccccgaggcgatccgcgcccag
gatcgcgagcgcctgatcgccgcgctgctcgctcccgtcgagatcgacgaggaggatgcc
gccatcgccgagcgcctcctcgccgagcgcacgcccgccgagatcgccgccgcgctcgtc
cgcgcgcaccgtgccgcgatgccggcgcccgaggagctcagcagccagggcgatcgccgc
gaggagcgccaggccgggcagcatcgtccgggctttgacgacgtcgcctggttccgcatg
gatatcggtcgccgccagaatgccgatccgcgctgggtgctgccgctgatctgccgtcgc
gggcacatcaccaagaacgaagtcggcgcgatccgcatcgggccgaacgagaccgcgttc
cagatcccgcgcgcgctggcgagcaagttcatggccgccgtggcgcgcaccgccgagggt
gacgaggacgtccgcatcgaggcgtcggatgcgccgccggcacagggtgcccgtccgcag
cgtaacggtccgaaccgtcctgccggcggtccgggtggcacgggcgcgccgcggcatcag
ccccggccctatcgcaaggcgccgccggcccggggcccctcgcaccggtga
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