Sphingomonas sp. NIBR02145: O3305_03520
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Entry
O3305_03520 CDS
T10953
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spnb Sphingomonas sp. NIBR02145
Pathway
spnb03030
DNA replication
spnb03430
Mismatch repair
spnb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spnb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O3305_03520 (dnaE)
03430 Mismatch repair
O3305_03520 (dnaE)
03440 Homologous recombination
O3305_03520 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spnb03032
]
O3305_03520 (dnaE)
03400 DNA repair and recombination proteins [BR:
spnb03400
]
O3305_03520 (dnaE)
Enzymes [BR:
spnb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
O3305_03520 (dnaE)
DNA replication proteins [BR:
spnb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
O3305_03520 (dnaE)
DNA repair and recombination proteins [BR:
spnb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
O3305_03520 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
Ribophorin_II_3rd
Motif
Other DBs
NCBI-ProteinID:
WHU03684
LinkDB
All DBs
Position
762049..765522
Genome browser
AA seq
1157 aa
AA seq
DB search
MHSGFVPLRVFSSFTMLEGAIEPKAIPKRAKELGFPAIAVADRNGLYASMSFGDAAMKSG
IQPIIGTLLAVKRPNMPDGVAAPIDWLALYAQDDAGYLNLCDLVSMAHLDRPLEEEAHIP
FDALEGRTDGLICLTAGREGALARLYAEQQDSAAAYYASRLESLFGDRLYIEIVRRLDEI
EGRAEPRLLDLAYDRNLPLVATNPSCFAEPTFHEAHDAMLCIANSSYIATDDRPRSSPDA
WIKPANEMKSLFSDLPEAIANTLVIAQRCACTAPKRKPILPSLAGDREGEAQALRDLSWQ
GLEKRFEKAGITDPEERKAYNERLQFELDIIIQMGFPGYFLIVADFIQWAKAHDIPVGPG
RGSGAGSAVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQK
YGADHVAQIITFGTMKARAVVKNVGRVLQMSYGQIDRLAKQIPNHPTDPWTLERTLNGVG
EFLAEYNNHKEIKYLVDLSMRLEGLPSHSSTHAAGVVIGDRPLSQLVPLYRDPRSDMPVT
QFDMKYVEGAGLVKFDFLGLKTLSVLKKAVELLADRGLDVDLDALPWDDTEVYDLLQRGD
TVGVFQLESEGMRRTLTAVRPTNFGDIIALVSLYRPGPMDNIPSFGHRKAGREEIIYPHD
LLEPILNETYGIFVYQEQVMQAAQILAGYSLGGADMLRRAMGKKIKAEMDAQRETFVKGC
AEHNGIKPAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPHEFFAASMAYD
IHQTDKLAIFVDDMKRLGISYLSPDINRSQADFFVEKTEEGLAVRYALGALKGVGEGAME
ELVRDREERGVYKSLDDFALRTNPQLINKRQLETLAASGAFDSINDNRAGVYGAAELIMA
VCQRSHGERNSFQASFDMLTKPAGDEIRVADDVYWSTSDRTGYEREAFGFYFQAHPLDRF
QHLARTFGAIDIVSLNEVDVPPGTRVGATLAVLVEDCRPRTSARGNRYVMASISDKSAQT
IASCFEDSAVPDLERCAREGGCAVLTVELDKRAGEDTPRVSIKRVQSIESLANTARLVLD
VTIDDVHAVAILAGIISDQRGGRGEVVVHVGIPGGTADIVLGRDFRLDGELRQKIENVPG
IRWATLKSAAAKLAEAA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgcattccggcttcgttccgcttcgggtcttctcgtccttcaccatgctggagggcgcg
atcgaacccaaggcgatccccaagcgggcgaaggaactcggttttccggcgatcgcggtg
gccgatcgcaacggcctctatgcctcgatgagcttcggcgatgcggcgatgaagtcgggc
atccagccgatcatcggcacgctgctcgcggtcaaacgcccgaacatgcccgacggagtc
gcggcgccgatcgactggctggcgctctatgcgcaggacgatgccggctatctcaacctg
tgcgacctcgtctcgatggcgcatctcgatcgcccgctcgaggaagaggcgcatatcccc
ttcgacgcgctcgaagggcgaaccgacggcctgatctgcctgaccgcggggcgcgagggt
gcgctggcgcggctctatgccgagcagcaggacagcgcggctgcctattatgccagccga
ctcgagtcgctgttcggcgaccggctctatatcgagatcgtccggcgcctggacgagatc
gagggcagggcggagcccaggctgctcgatctggcctatgaccggaacctgccgctggtc
gccaccaacccaagctgcttcgccgagccgaccttccacgaagcgcatgatgcgatgctg
tgcatcgccaacagctcatacatcgcgaccgacgatcgcccgcgttcctcgcccgacgcc
tggatcaagccggcgaacgagatgaagagcctgttctcggacctgcccgaggccatcgcg
aatacgctcgtcatcgcccagcgctgcgcctgtaccgcgcccaagcgcaagccgatcctg
cccagccttgcgggcgaccgtgagggcgaggcccaggcattgcgcgatctcagctggcag
gggttggaaaagcgctttgagaaggccgggatcaccgatccggaagaacgcaaagcgtat
aacgaacggctccagttcgagctcgacatcatcatccagatgggcttcccgggctatttc
ctgatcgttgccgacttcatccaatgggcgaaggcgcacgacattccggtggggccgggc
cgtggttcgggcgcaggctcggcggtcgcctgggcgctgaccatcaccgatctcgacccg
ctcaagctcggcctgctcttcgagcgcttcctgaacccggaacgcgtctcgatgcccgac
ttcgacatcgacttctgcgaaacaaggcgtggcgaagtgatccgctacgtccagcagaaa
tacggcgccgatcacgtcgcgcagatcatcaccttcggtacgatgaaggcgcgcgcggtg
gtcaagaacgtcggccgcgtgctgcagatgagctatggccagatcgaccggctggccaag
cagatcccgaaccacccgacggatccctggacgctcgagcgcacgctgaacggcgtcggc
gagttcctggccgagtataacaaccacaaagagatcaagtacctcgtcgatctctcgatg
cggctggagggtctgccgagccactcgtcgacgcacgccgccggcgtggtgatcggcgat
cgcccgctgtcgcagctggtcccgctctaccgcgatccgcgctcggacatgccggtgact
cagttcgacatgaaatatgtcgaaggcgcgggcctggtgaagttcgactttctcggcctc
aagacgctgtcggtgctcaagaaggcggtcgagctgctcgccgatcgcgggctcgacgtg
gatctcgatgcgctgccctgggacgataccgaagtctatgacctgctccagcgcggcgac
acggtgggcgtgttccagctggaatcggaaggcatgcggcgcacgctgaccgcggtgcgt
ccgacgaacttcggcgacatcatcgcgctcgtgtcgctctaccgcccgggcccgatggac
aacatcccgagcttcggccaccgcaaggccgggcgcgaggagatcatctatccgcacgac
ctgctcgagccgatcctgaacgagacctacgggatcttcgtctatcaggagcaggtgatg
caggccgcccagatcctggccggctattcgctcggtggcgcagacatgctgcgtcgcgcg
atgggcaagaagatcaaggcggagatggacgcccagcgcgagaccttcgtgaagggctgc
gccgagcataacggcatcaagccggccaaggccaacgagctgttcgacttgatcgacaag
ttcgccggctacggcttcaacaagtcgcacgcagctgcctatgcgctactcgcgtaccag
acggcgtggctcaaggcgcatcatccgcacgagttcttcgccgcgtcgatggcgtacgat
atccaccagaccgacaagctggcgatcttcgtcgatgacatgaagcggctcgggatcagc
tatctgtcacccgacatcaatcgcagccaggccgatttcttcgtcgagaagaccgaggag
gggctggcggtccgctatgcgctgggcgcgctcaagggcgtgggcgaaggcgcgatggaa
gagctggtgcgcgatcgcgaggagcgcggggtctacaagtcgctcgacgacttcgcgctg
cgcaccaatccgcagctgatcaacaagcggcagctcgaaaccctggctgcctcgggcgct
ttcgattcgatcaacgacaatcgggccggcgtctatggcgcggctgagctcatcatggcg
gtctgccagcgctcgcatggggagcggaacagcttccaggcgtccttcgatatgctcacc
aagcctgccggcgacgagatccgcgttgccgatgatgtctattggtcgacctccgaccgg
accgggtatgagcgggaagcctttggcttctatttccaggcgcatccgctcgatcgtttc
cagcacctcgccaggactttcggcgcgatcgatatcgtgtcgctgaacgaggtggacgtg
ccgcccggcacgcgcgtgggcgccacgcttgcggtgctggtcgaggattgccgtccccgc
acctcggcgcgcggcaatcgctacgtgatggcgtcgatctcggacaagtcggcccagacc
atcgccagctgcttcgaggacagcgccgtccccgatctcgagcgctgcgcccgcgaaggc
ggttgcgcggtgctgacggtggagctcgacaagcgcgccggcgaagatacgccgcgcgtt
tcgatcaagcgcgtccagagcatcgagagccttgccaacacggcaaggctggtgctcgac
gtgaccatcgacgatgttcatgcggttgcgatcctcgcgggcatcatcagcgatcagcgt
ggcgggcgcggcgaagtcgtcgtgcatgtcggcattccgggcggcacggcggatatcgtg
ctgggccgcgacttccggcttgatggcgaactgcgccagaagatcgagaatgtccctggc
atccgctgggcaacgctgaagagcgcggcggcgaagctggccgaggcggcttag
DBGET
integrated database retrieval system
