Sphingomonas sp. NIBR02145: O3305_05475
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Entry
O3305_05475 CDS
T10953
Name
(GenBank) RNA polymerase sigma factor
KO
K24073
RNA polymerase sigma factor CnrH
Organism
spnb Sphingomonas sp. NIBR02145
Brite
KEGG Orthology (KO) [BR:
spnb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spnb03021
]
O3305_05475
Transcription machinery [BR:
spnb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
O3305_05475
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_28
HTH_23
PhyR_sigma-like
HTH_Tnp_ISL3
GerE
HTH_30
HTH_17
HTH_24
HTH_AsnC-type
Xre-like-HTH
HTH_3
Motif
Other DBs
NCBI-ProteinID:
WHU04043
LinkDB
All DBs
Position
complement(1170584..1171150)
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AA seq
188 aa
AA seq
DB search
MSLDFASLSDGELAALSLAGRTAAFAEILRRHREAIYRIVAGSIGDPDEALDLVQETFLA
AHGALRRYDPARPMRAWLTTIAINKCRDWGRRRAVRRLIAFALPIDDAAERVAEDRPGHD
VEIADREALARTSRAIAGLPSSLREVIVLRTIEGLSQAETAAALGVSEKAVETRLRRGRI
RLGEVLGS
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctggatttcgccagcctgagcgacggcgagcttgccgcgctgagcctggccggg
cggacggcggcgttcgccgagatattgcggcggcaccgcgaggcgatctaccggatcgtg
gcggggtcgatcggcgatcccgacgaggcgctcgacctggtgcaggagacgttcctggcc
gcgcatggcgcgctgcgccgctacgatccggcgcggccgatgcgggcctggctgaccacg
atcgcgatcaacaagtgccgggactggggcaggcggcgcgcggtgcgtcggctgatcgcc
tttgccttgccgatcgacgatgcggccgagcgcgtggccgaggaccggcccgggcatgat
gtcgagatcgccgatcgtgaggcgctggcacggacgtcgcgggcgatcgctgggctgcct
tcctcgttgcgcgaggtgatcgtgctgcggacgatcgaagggctgtcgcaggccgagacg
gcggcggcgctgggggtcagcgagaaggcggtggagacgcggctgcggcgggggcggata
cggctgggggaggttttgggttcgtga
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