Sphingomonas sp. NIBR02145: O3305_10465
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Entry
O3305_10465 CDS
T10953
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
Organism
spnb Sphingomonas sp. NIBR02145
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
TEN_YD-shell
LysM
DUF6531
Motif
Other DBs
NCBI-ProteinID:
WHU04984
LinkDB
All DBs
Position
complement(2400253..2410041)
Genome browser
AA seq
3262 aa
AA seq
DB search
MVAIFAGAGAGFQRGSGSTLGSSGLLGSASFGRSGEQLFLNAANGNLLISRQDEFLAGRG
PDIDVSRTYNSLGNQSDDNGDNWRQSTQRVLQLNGALNGAGSTITYRSGDGSDVAYAWNG
SAYVTTDGGGAYDKIVWNGSGFTRTDGSNATISETYQSDGVTSWYRLKTISDTDGNSITY
GYSADKLTSISSSNGESLTYVWSGNHISEVISGDGTSTVYNYDGYGRLSQVAVQLAAGGG
TFYSTWYSYVGSSTLVSRIEQSDGSILEIGYDGANRVTSMVQTAAAGDTRTTSIAYGSGY
SVVTDPTNQATTLYYDGAGQLTKVVAPPASAGAAQQVVQFGYDGNGNLSTVTDAMGQTVT
YGYDGWGNVTSQSDRLSNLVTRTYNGFNQVVTETRAGSDKDSSSDYHTTRFVYDGAGRLR
YTISAEGNVVEYDYDGFGQVNYTQTYRTKYDVSGLSATFAPTPTDMSNWVGSVANPNEIE
IVQFVYDARGNMSQRISYGAANASGSGSVAGGYTHEYFTHDTAGRLLYSVAAGQNATTYV
YDGLGRLTSSTDVNGGTTSFVFNDAATTTTVTLAGGAVQTSVYNKAGDLVSFTESGNAVQ
GGTSTYLYDKDGRVRKMTDATGRVFYYLYDKVGRKVADISQTGEVSEYRYNDNNQLVATV
HYALGSGNFSMLNDPNTTVEMAAIRPGSDPYDVWTFSVYDKEGRVIEAIEGDGSVTAYEY
DASGRLVKTTAYVNKLTTGQLDAFKANGPSAWLPAASTGDSVARIFYDKAGRVIGALDGE
GFLTRTIYDGAGQKVQEIAYANVTGAVYRASSSFQALINSVGTSTSDRSVRYVYDQQGNL
RFTIDPLNHVTEYIYEYSSWLYSAFGPVRETIQYAATIPVLGSYTFASVKSAVAGLANDA
ANRLNYAIYDDAGRVAYTIDAAGGVIGFTYNALGKVTRKTEHANTWAGIGLYSKADWDNW
AAGSPSSSDRITRYYYAANGDLRFTIDAEGYITRTDYDAEGRVVTLMRWATPVSPNDSWT
IDTASNAQSGDYTHTSTYYDSRGQVTLVVDGAGRSTRYYYYATGLLAWEISSEGSQDDSR
TLYVYDQAGHKTAAYAAYGTAEQAITTYNYDGLGNLVAVNDPNAHTTSFFYDHAGRLTRQ
TNAQGSPTDFAYNAFGERVSVTDALGNTSYSYYDNAGRVIATRDAENDVIETGYNAFGEI
AWVKQLYNKAYNAASAATWPAYTPDSARDAVTQFEYDRLGRLTRTIDALGYYEQYTLNAF
GQRTAVRNKAGGTTTNAYDRRGLLVSETLPMASVDMWGSAISATVTNTFGYDARGNRVWM
REAAGLAEQRYTSFIYDKADRLIEKRGDTVLYVDQANHVGALYTNLIERYAYDTRGNLIE
VVDANGARTLFYYDDLNRKIADINATGTLSTYGYDAVGNLTRSRTWGTVISQPSTAGGTP
PAAPGGEYREASYTYDQVNRLRTTTVSGVRTGSWNGSVFVTTTAPLVTTNEYDAVGNLRV
VTDANGGVTRYRYDALGQKTRQIDAEGYITGWIYDAQGNVVHERRWALKAIDGYYDPAVS
GDDRVTNFTYDRNGRRLTEERSTVDSYGVNEYGQLYGTYGTATVSYSYNELGQVLRKTES
TGDYVDYSYDASGRLIAERRGAYSEMNVYGVIRPTVRYFYNGLNNLTRTEQGVEDAGQAG
RVTRYGYGMGQRLDWMIDANGATTAYYYDAAGNVVRQNYTREHSGGSTTYEGVLYTRDVL
GRMTSQAVGVWDGSAFNKGDIQQTAYNAYGEVSQRGINGGWQEQFAYDGAGRLYRSNSGD
GVWRYYIYDGVGNQTATIESEGSWIGANSLDGAISGATYGFAYYLGQVYVDGVNITINAY
DRRNQATATILTQRQLGGSGGIVNISTARGYNAFGEALWERDVRGNQTNYTYNSMGRVTS
VQRPSVIVTTEYGYSYWTNPTEYYYYDLSGRAIGVRDANGNLTTRRLLAGTGYSKGEALV
AREFHADGGTVTYGYDRYGDLRSVVDEVGRQTNNYYDGMGRLTQVTRPSGQAEYYAYDVL
GQRIRHWNSYYGTANVERTDYDQQGRVISQVAYGGDTTTTSYAWSWQSTNGLGSYGGWYQ
TTTYANGRSSVQQEDMFGHVLYTSDLGGHGTWYNYDYAGRMVQRYGGETVNYDYLNTGLI
SAMTSGYGSPTSAQNNFGETYQINKTSYSYDAAGNKLTESYTVENGGWYDNGWYEYNYDY
GYYDQYWVSNWEYSSSVITYQNGAASYDALGRVTNWSESGNSTTPAASITYSYDANGNVR
RSYATYYVLDQNGGASYQTTQDYWYRYDSMNRVVTSKGQQSGGVVRGYQGVDLAYNAAGE
RVQSTRTVTAYGQVYWEYYDPNMYGGWGGYNYGYQDVPYEADSREDYGYDADGHLSTVRI
AQSGYYDNGDGTVTVTSPPGTGALKANYYYDGMGRLYHQIDWLGDGNTAAYDRTLTYNDK
GQVYYEVTVQRQGADTITTYSSTDFGYGSNYALGAAVSISTSNYKNGSYQSYSTTSNNFA
WYAGAVQASTSYTQSGQGTQTSTFYYGASGQLTSVYVADGRPHSISFTNDMNGQTIRRDE
YDNVYNQGDPHEVWYRFNGKQMGYTGNNGTQNTDYQSSINQRTWTPGNGAFQNGSTYGSA
YADFDQSFTGITSYNQGGAGGSYTVRTGDTLQSIAAQLWGDSSLWYQLAEANGISGAGGL
VEGQALTIPSGVIRSSNSATTFTPYDPASILGDTSPTTPQPQKAAKKKSGCGVFGQVLLA
VIGAVVSFIIPPIAPALGPVLSGALTAAAVNVVTQGIAVATGLQDKFSFKGVALAAIGGG
VGGGLSSIGGKVGSFLKADNFISNTVRGALGNAITQGVAVVTGLQPKFDWAGVAVAGITA
GVEGAVRRSLPGQKGEIYEGDDGSIKGRTHATLANSLASSAAGVLAGAATRSLLTGTDFG
DNIVASLPGAIGRTLGNALAAEMFGPDDVVLIDAATRREIEGGAPQTAPTTTPPVPAGAP
PAGTIGAIKDFQTILGPDVGKLLANSPSALAQIATLNAKGYKIEIGPAGKGTYTDVDHRR
IVISQDRFDSAGNVVDALGHEIGHALYTGKDNLTSRADYIQGKMRGEAFATWNELTINQE
INTALPNSIVVGGSTGTTIKAIFDANSAVMGKNPTTAVLDQIGAIYANNNPSTAPTKTYT
QYYSDGYDAIRNSIISTNVKITANNAIIASNNKKISAYNASITGENAKITAWNKYIFPKP
PVPLLTPQKLQKAQPLLRVPPM
NT seq
9789 nt
NT seq
+upstream
nt +downstream
nt
atggttgcgatcttcgccggcgcgggtgcgggtttccagcgcggttcgggtagcacgctg
ggctcgtcggggctgctgggttcggccagcttcggacgcagcggcgagcagctgttcctc
aatgcggcaaatggcaatctgctgatcagccgacaggacgagttcctggcgggtcgcggc
cccgacatcgatgtgagccggacctataacagcctcggtaaccagagcgacgacaatggc
gataactggcgccagagcacgcagcgcgtcctccagctcaacggagcgctgaacggcgcc
ggcagcacgatcacctatcgcagcggcgacggcagcgacgtcgcctatgcctggaacggc
tcggcctatgtcacgaccgacggaggcggggcatatgacaagatcgtctggaacggctcg
ggctttacccgcaccgatggcagcaacgcaacgatcagcgagacctatcagagcgacggc
gtaacgtcatggtatcgcctcaagaccatctccgatacggatggcaacagcatcacctat
ggctatagcgccgacaagctgacctcgatcagcagctccaacggtgagtcgctcacctat
gtctggagcggcaaccatatcagcgaggtgatctcgggcgacggcacctccaccgtctac
aattatgacggctatggcaggctctcgcaggtcgcggtccagctcgccgccggcggcggt
accttctattcgacctggtacagctatgtcgggtcgagcactttggtgtcgcgcatcgag
cagagcgacggttcgatcctcgagatcggctatgacggggccaatcgggtcaccagcatg
gttcagaccgcggcggcgggcgacacgcgcaccaccagcatcgcctatggttcgggctat
tccgtcgtcacggatcctaccaaccaggcgacgactctatattatgacggcgccggccag
ctgaccaaggttgtcgcgccgccggcttcggccggggcggcgcagcaggtcgtgcagttc
ggctatgacggcaatggtaatctgagcaccgtcaccgacgccatgggtcaaaccgtgacc
tatggctatgatgggtgggggaatgtcaccagccagagcgatcggctgagcaacctggtc
acgcgcacctataatggcttcaatcaggtcgtcaccgagacacgcgcgggctcggacaag
gattcctcgtccgactaccataccacgcgctttgtctatgatggcgccggtcggctgcgc
tacacgatcagcgccgagggcaatgtcgtcgaatatgattatgacggtttcgggcaggtc
aattatacccagacctatcgcaccaaatatgatgtgagcgggctgtcggcgaccttcgcg
ccgacgccgacggacatgagcaactgggttggcagcgtcgccaatcccaatgagatcgag
atcgtccagttcgtctatgatgcgcgcggcaacatgtcgcagcgcatctcctatggcgca
gccaacgcatccggctcgggctcggttgctggcggctacacccacgaatacttcacccat
gataccgccggccggctgctctattcggtggccgcgggacagaacgccaccacctatgta
tatgacgggctcggtcgtcttacttcgagcaccgacgtgaacggcgggacgacgagcttc
gtcttcaacgatgcggcgaccaccacgactgtcacccttgccggtggcgctgtccagacc
tcggtctacaacaaggctggcgatctggtcagcttcaccgagagcggcaacgccgtgcag
ggcggtacttcgacctatctttacgacaaggacggccgcgtccggaagatgaccgacgcc
acggggcgggtattctattatctctacgacaaggtcggccggaaggtcgccgacatctcg
cagaccggcgaggtatccgagtatcggtacaacgataataaccagctcgtcgccacggtg
cactatgcgctcggcagcggcaatttctcgatgctcaacgatccgaacacgaccgttgag
atggcggcgatccggcctggcagcgatccctacgatgtctggaccttctcggtctatgac
aaggaaggccgggtaatcgaagcgatcgagggcgatggttcggttaccgcgtacgaatat
gatgcctccgggcgtctggtgaagaccaccgcttatgtgaacaagctcaccaccggtcag
ctcgacgcgttcaaggcgaacggaccgagcgcgtggctgccagctgccagtactggcgac
agtgtggcgcgcatcttttacgacaaggcaggacgggtgatcggcgcgctggacggcgaa
ggcttcctgacccgcaccatctatgacggtgccgggcagaaggtgcaggagatcgcctat
gccaacgtcactggcgcggtctaccgcgcctcgagcagtttccaggcactgatcaatagc
gtcggtaccagcaccagcgatcgctcggtacgctatgtctatgatcagcagggcaatctg
cgcttcaccatcgacccgctgaaccacgttactgaatatatctatgaatattcgagctgg
ctctacagcgctttcggcccggtgcgcgagacaatccaatatgccgctaccatcccggtg
ctgggcagctacacgttcgcttcggtcaagagcgcggtggctggcctcgccaacgatgcg
gcgaaccgcctaaactatgcgatctacgatgatgccggccgggtagcctataccatcgac
gctgccggcggcgtgatcggcttcacctacaacgccctcggcaaggttacgcgcaagacc
gagcatgcgaacacctgggcgggcattggcctgtacagcaaggcggactgggataattgg
gctgccggcagccccagctccagtgaccgtatcacccgctactactatgccgccaatggc
gacctgcgtttcacgatcgatgcggaaggatatatcacccgtaccgattacgatgccgag
ggccgcgtcgtaaccctaatgcgctgggcaacgccggtatcgcccaatgacagctggacg
atcgataccgcaagcaacgcacagagtggcgactatactcatacgagcacctattatgac
tcgcgcggtcaggtcacgctggtcgtggatggggccgggcgttcaacgcgctattactat
tatgccaccggccttctcgcctgggagatcagctcggaaggttcgcaggacgatagccga
acgctctacgtctacgaccaggcaggccataagaccgcagcatatgccgcctatggcacc
gccgagcaggcgatcaccacctataactatgacggcctgggcaatctggtcgcggtcaac
gaccccaatgcgcacacgacctcgttcttctacgatcatgccggccgcctgacgcgacag
acgaacgcgcagggctcgccgacggatttcgcctacaacgcctttggcgagcgggtgagc
gttaccgatgcgctcggaaacacgagctacagctattatgacaatgccggccgcgtgatc
gccacgcgcgacgcggaaaacgacgttatcgaaacgggctataacgcgttcggcgaaatc
gcctgggtgaagcagctctataacaaggcatacaacgcggcatccgccgccacctggcca
gcctatacgcctgattccgcgcgcgatgcggtcactcagttcgaatatgacaggcttggt
cgcctgaccaggacgatcgacgcgctgggctattatgagcaatatacgctcaacgccttt
ggtcagcgcaccgcggtgcgcaacaaagccggcggcaccactactaacgcctatgaccgt
cgcggcctgctcgtttccgagacgctgccgatggcctcggtcgatatgtggggcagcgcc
atctcggcgaccgtgaccaataccttcggctacgatgcgcgcggcaaccgcgtgtggatg
cgtgaggcggcgggtctcgctgaacagcgctacactagcttcatctatgacaaggcggat
cggctgatcgagaagcggggcgataccgtcctgtatgtcgaccaagccaaccatgtaggt
gcgctctacaccaacctgatcgagcgctacgcctatgacacgcgcggcaacctgatcgag
gtggtcgatgccaatggcgcgcggacgctgttctattacgatgacctgaatcgcaagatc
gccgatatcaacgcgaccggcacgctttccacctatggctatgatgcagtcggcaatctc
accaggtcgcgtacctggggcaccgtgatttcccagccatcgactgcaggcggcacgccg
cccgctgcgccgggtggggaatatcgcgaggcgagctacacgtacgaccaggtgaaccgc
ctgcgcactacgacggtaagcggcgtgcggaccggcagctggaacggctcggttttcgtg
acgaccaccgcgccattggtcacgaccaacgaatatgacgcggtcggcaatctccgcgtg
gtgaccgatgcgaatggtggggttacccgttatcgctacgacgcgctgggtcagaagacc
cggcagatcgatgccgaaggctatatcaccggctggatctatgatgcgcagggtaatgtc
gtccatgagcgtcgttgggcgctcaaagcgatcgatggctattacgaccccgctgtctct
ggcgatgatcgtgtcaccaactttacctatgatcgtaacggccgccgcctgaccgaggag
cgctcgaccgtcgattcctatggggtgaacgaatatgggcagctctacggcacctacggc
accgcaacagtcagctacagctacaatgagcttggccaggtcctgcgcaagaccgagtcg
accggcgactatgtcgattacagctacgatgccagcgggcgtctgatcgccgaacgccgc
ggtgcctatagcgagatgaacgtctatggcgtgatccggcctacggttcgctatttttac
aacggactcaacaatctgacgcggaccgagcaaggcgtggaagatgccgggcaggcgggg
cgcgtcacccgttacggctacggcatgggccagcggctcgactggatgatcgacgcgaac
ggcgcgaccacggcctattactacgatgccgcgggcaacgttgtccggcagaattacaca
cgcgagcattcgggcggcagcacgacctatgagggcgtcctgtatacgcgtgacgtactg
ggccggatgacctcgcaagccgtcggggtctgggatggatcggccttcaacaagggcgat
atccagcagactgcgtacaacgcctatggtgaggtgtcacagcgcggcatcaatggcggc
tggcaggaacagttcgcctatgatggtgctggccggctctatcgctccaattcgggcgac
ggcgtttggcgctactacatctatgacggcgtcggcaaccagaccgcgaccattgaaagc
gagggtagctggataggggccaattcccttgatggcgcgatctcgggcgcgacctatggc
ttcgcctattatctcggtcaggtttacgtcgatggcgtcaacatcactatcaacgcctat
gaccgccgcaaccaggcgactgcgacgatcctgacgcagcgccagctgggcggatcgggc
ggcatcgtcaatatcagcacggcccgcggctataacgcgttcggcgaggcactctgggag
cgcgacgtgcgcggcaaccagacgaactacacgtataatagcatgggccgggttacttcg
gttcagcgaccatcggtgattgtaaccaccgaatatggctacagctattggactaatccg
accgaatattactactatgatctctccggccgcgcgatcggtgtgcgtgatgccaatggc
aatctgacgacccgacgcctcctcgccggcacaggttacagcaagggcgaagcgctggtc
gcgcgtgaattccatgccgatggcggcactgtgacctatggctatgatcgctatggcgac
ctgcgcagcgtcgtcgatgaagttggccggcagaccaacaattactacgacggcatgggg
cggctcacccaggtaacgcggccgagcggtcaggccgaatattatgcctatgacgtgctg
ggccaacgcatccggcattggaacagctattacggcacggcgaatgtcgagcggaccgac
tatgaccagcagggccgtgtcatcagtcaggtcgcttatggcggcgataccaccacgacc
agctatgcctggtcgtggcagtcgaccaatggtctcggtagctatggtggctggtatcag
actacgacgtacgccaatggtcgtagctcggtgcagcaggaggacatgttcggacatgtc
ctctatacctcggatctcggtggccacggcacctggtataactatgattatgccggccgg
atggttcagcgctacggcggtgagacggtcaattacgactatctcaacaccggcctgatc
agcgcgatgacgagcggttatggctcgccgaccagcgcgcagaacaatttcggcgaaacc
tatcagatcaacaaaaccagctacagctacgatgccgcaggcaacaagctgaccgagagc
tatacggtcgagaatggcggctggtacgacaatggctggtacgaatataattacgactat
ggctattatgaccagtattgggtttcgaactgggaatattccagcagcgtaatcacctat
cagaacggtgccgccagctacgatgcgctcggccgggtgacgaactggagcgagagcgga
aacagcaccacgcctgccgcgagcatcacgtatagctacgatgcgaacggcaatgtccgc
cgctcctatgcaacctattacgtgctcgatcagaatggaggcgcgtcgtaccagaccacc
caggactattggtaccgctatgactcgatgaaccgggtcgtgacctcgaaggggcagcag
tccggcggcgtcgttcgcggctatcagggtgtcgatcttgcgtacaacgccgcgggcgag
cgtgtgcagtcgacgcgcacggtcactgcctatgggcaggtctactgggaatattacgat
cccaatatgtatggcggttggggcggctacaactacggctaccaggacgtcccctatgag
gcggacagtcgcgaggattatggctacgatgccgatggccacctctccacggtgcgcatc
gcgcagagcggctattacgacaacggtgatggcacggtcaccgttacctcgccgcccgga
accggggcgctcaaggccaattactactatgacggcatgggccgtctctaccatcagatc
gactggctgggcgatggcaacaccgccgcctatgaccggacgctgacgtataacgacaag
gggcaggtctattatgaggtgaccgtccagcgccagggcgcggacacgatcacgacctac
agctccaccgatttcggctatggttcgaactatgcgcttggcgcagcggtgagcatatcg
acctcaaactataagaacggcagctaccagtcctattcgaccacctcgaacaacttcgcc
tggtatgccggtgcggtgcaggcgagcacgagctatacgcagtcgggccagggcacccag
acctcgacattctactatggcgcgtcggggcagctgacctcggtgtatgtcgctgacgga
cggccccattctatctcgttcaccaacgacatgaacggtcagacgatccggcgcgacgag
tatgacaatgtctacaaccaaggcgatccgcacgaggtctggtatcgcttcaacggcaag
cagatggggtataccggcaacaacggcacccagaacaccgactatcagagctcgatcaat
cagcgaacctggacgcccggcaacggcgctttccagaatggttcgacctatggctcagcc
tatgccgattttgaccagagcttcaccggcatcaccagctataatcaggggggcgctggt
ggcagctacaccgtacgcaccggcgacacccttcagtcgatcgctgcacaactctggggt
gacagttcgctctggtatcaactggccgaggccaatggcatttccggcgcgggtggactg
gtcgaagggcaggcgctgactatcccttcgggcgtgatacgctcgtcgaatagcgcaacg
acgtttaccccctacgaccccgcttcgatcctgggcgataccagcccgacgacaccgcag
ccacagaaagcagcgaagaagaagagcggctgcggcgtctttggtcaagtactgctggcc
gtgatcggcgctgtggtgagtttcatcatacccccgatcgccccggcgctcgggccggtg
ctgagcggtgcactcaccgccgcggcggtcaacgtcgtcacccaaggcattgcggtggcg
acagggctgcaggacaagttcagtttcaagggcgtggcgctggcagcaattggcggcgga
gtgggaggcggcctcagcagcatcggcggaaaggtcggcagcttcctcaaggccgacaac
ttcatcagcaataccgttcgtggcgcgctgggtaacgcaattacccaaggtgtcgctgtg
gtgacggggctgcagccgaaattcgattgggcgggcgtcgccgtcgccggcattaccgcc
ggtgtggaaggtgcggttcgtcggtcccttcctgggcagaagggcgaaatctacgagggc
gatgacggctcaatcaaggggcgtacccatgcgaccctggccaacagcctggcgtccagc
gccgcaggcgtattggctggggccgccacgagatccctgctcacgggcactgatttcggc
gacaatatcgtcgcgtcgctcccgggagcaattgggcggacgctcggtaacgcgctcgca
gcggagatgttcggtccggacgacgtagttctgatcgatgcggccacgcgccgggagatc
gaaggcggtgcgccgcaaaccgcgccgaccaccactccgccagtgccggccggagcgccg
ccggccggtaccatcggggccatcaaggacttccagaccatacttggccccgacgtaggc
aagctcctggcaaattcgcccagcgcgttggcccagatcgccacgctgaacgccaaagga
tacaagattgagatcgggccggctggtaagggcacctacacggatgttgaccaccggaga
atcgtgatttcccaggatcgctttgatagcgccggaaacgtggtcgatgctctgggtcat
gaaatcggccacgccctatacaccgggaaggataatctgacttcacgtgcggactacatc
caaggaaagatgcgcggtgaggcctttgccacctggaacgagctgacaatcaatcaggaa
ataaacacggcacttcccaactcgattgtcgtgggtggatcaacggggaccacgatcaag
gcgatattcgatgccaattcggcagtgatgggaaaaaatcccaccacggctgtgctcgac
cagattggggcgatctacgccaataacaatccgtcgactgcgccgaccaagacctacacg
caatattatagcgatggttatgacgcaattaggaatagtataattagtacaaatgtaaaa
ataactgcaaataatgctattattgcttcaaataacaagaagatttctgcctataatgca
tctattactggtgaaaatgctaagataactgcatggaataagtatatcttccccaagccg
ccagtgccgctgctgacgccgcagaagctgcagaaggcgcagccgctgctcagggttccg
ccgatgtag
DBGET
integrated database retrieval system
