Sphingomonas sp. NIBR02145: O3305_10505
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Entry
O3305_10505 CDS
T10953
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
spnb Sphingomonas sp. NIBR02145
Pathway
spnb02020
Two-component system
spnb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spnb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
O3305_10505
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
O3305_10505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spnb03021
]
O3305_10505
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
spnb02035
]
O3305_10505
Transcription machinery [BR:
spnb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
O3305_10505
Bacterial motility proteins [BR:
spnb02035
]
Flagellar system
Flagellar assembly proteins
Stator
O3305_10505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r4_2
Sigma70_r2
HTH_23
MarR_2
HTH_28
KORA
MenC_N
HTH_IclR
TY-Chap3
HTH_38
Motif
Other DBs
NCBI-ProteinID:
WHU04992
LinkDB
All DBs
Position
complement(2416488..2417231)
Genome browser
AA seq
247 aa
AA seq
DB search
MKARRGTVTSGLGLLLVPPRVEASLWRRFRYERETRCREQIFTRYRGLARSIALRQLRVR
PRNGIELRDMEQFAYEGLLVAIDRFDPLRGIPFGAFARRRIIGSIADGTSRMSEIDAQYS
YRRRVEAERLRSIATGGDNIDALAALAELAAGLAVGLILEGTGLIEPEDGADRRPGAYES
LAWRQLQTQLVQEIDRLPEREGVIVRQHYENGVSFAQIAQLLGLSRGRVSQLHASAIGKL
RTRMGYR
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgcgacggggcaccgtcacctccggtcttgggttgctgctggtgccgccccgg
gtcgaggcttcgctatggcgacgcttccgctatgagcgggagacccggtgccgggagcag
atcttcacgcgctaccgcggactggcgcgatccatcgcgctgcgccagctgcgggtccgc
ccgcgcaatggcatcgagctcagggatatggagcagtttgcctatgagggactactcgtt
gcgatcgaccgcttcgatcccttgcgtggcatcccgttcggcgcctttgcccggcgcagg
atcattggcagcatagccgatggcacctcccggatgagcgagatcgatgcgcaatatagc
tatcgccgccgggttgaggcggaacgcttgcgttcgatcgccaccggaggcgacaatatt
gatgcgcttgccgcccttgcggagctcgccgcgggtctggcggtcggcctgattctggaa
ggtacgggactgatcgagccggaggacggagccgacaggcggcccggggcctatgagagc
ctggcctggcgccagctccagacccaactcgtccaggaaatcgatcggctgcccgagcgc
gagggggtgatcgttcgccagcattatgagaacggcgtaagctttgcccagatcgcgcag
ttgctcggcctgtccagggggcgcgtatcgcaactgcatgcgagcgccatcggcaagctg
cgcacaagaatgggatatcgatga
DBGET
integrated database retrieval system
